View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_40 (Length: 413)
Name: NF1114_low_40
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 73 - 409
Target Start/End: Original strand, 42409983 - 42410308
Alignment:
| Q |
73 |
atttagggtatcttgtattataagtattggtgaaataataaggaccaagagaaaaataaaatatgaaataataaaagatttgaagggagtgagtggatga |
172 |
Q |
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| T |
42409983 |
atttagggtatcttgtattataagtattgatgaaataataaggaccaagagaaaaataaaatatgaaataataaaagatttgaagggagtgagtggatga |
42410082 |
T |
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| Q |
173 |
ggttaaaggtttggttacggtaatgaaaagaacacgagttagtggggacagtgagtgttcttaccaagtgtttatgtgtggctgtagagtcatggacaca |
272 |
Q |
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| T |
42410083 |
ggttaaaggtttggttacggtaatgaaaagaacacgagttagtggggacagtgagtgttcttaccaagtgtttatgtgtggctgtagagtcatggacaca |
42410182 |
T |
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| Q |
273 |
aaataataatggcttaaagcatgcatgttgacattgtaattagtttgtggataccattcgatctataacaacaaacaactagctcagttgttattataaa |
372 |
Q |
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| T |
42410183 |
aaataa-------ttaaagcatgcatgttgacattgtaattagtttgtggataccattcgatctataac----aacaactagctcagttgttattataaa |
42410271 |
T |
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| Q |
373 |
cagtgtactacagttcttgtatttgtctgtggtgctg |
409 |
Q |
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| T |
42410272 |
cagtgtactacagtacttgtatttgtctttgttgctg |
42410308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 44109274 - 44109203
Alignment:
| Q |
7 |
cttgtatcgattctaagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttag |
78 |
Q |
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| T |
44109274 |
cttgtatcgattctaagtgtagatagcacattctcctctttctgttggaaaatggtttggcaaaacatttag |
44109203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 44146781 - 44146724
Alignment:
| Q |
21 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttag |
78 |
Q |
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| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttag |
44146724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 34456139 - 34456192
Alignment:
| Q |
198 |
aaaagaacacgagttagtggggacagtgagtg-ttcttaccaagtgtttatgtg |
250 |
Q |
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| T |
34456139 |
aaaagaacaagagttagtggggacagtaagtgtttcctaccaagtgtttgtgtg |
34456192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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