View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_41 (Length: 411)
Name: NF1114_low_41
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 36453092 - 36453389
Alignment:
| Q |
16 |
atgtcacattttgaagtgtgattgcaccgcaagatatttatcataaatttataacttaaaaagtgatgtgctacaacaatcaagattgtgatgtcatatt |
115 |
Q |
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| T |
36453092 |
atgtcacattttgaagtgtgattgaaccgtaagatatttatcataaatttataacttaaaaagtgatgtgctacaacaat-aagattgtgatgtcatatt |
36453190 |
T |
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| Q |
116 |
tcgattttttagcatgtacaatgctactaaatgcgattaaagtcatattggtcatatttgactgcgattttatataatatatagtaaattttgacgtggt |
215 |
Q |
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| T |
36453191 |
tcgattttttagcatgtacaatgctactaaatgcgattaaagtcatattggtcatatttgactgcgattttatacaatatataataaattttgacgtggt |
36453290 |
T |
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| Q |
216 |
ctaagtttgatcacgatataaaactgtagtcataaattcacatgttatcataaccttaannnnnnnnnnnnncaattgatcaataatttattttggtgt |
314 |
Q |
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| T |
36453291 |
caaagtttgatcacgatatagaactgtagtcataaattcacatgttatcataaccttaattttttaatttttcaattgatcaataatttattttggtgt |
36453389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 323 - 405
Target Start/End: Original strand, 44109192 - 44109274
Alignment:
| Q |
323 |
caccacagatactaaatgttttgccaaaccattttccgacagaaagaggagaatgtgctatctacacttagaatcgatacaag |
405 |
Q |
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| T |
44109192 |
caccacagatactaaatgttttgccaaaccattttccaacagaaagaggagaatgtgctatctacacttagaatcgatacaag |
44109274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 44146713 - 44146781
Alignment:
| Q |
323 |
caccacagatactaaatgttttgccaaaccattttccgacagaaagaggagaatgtgctatctacactt |
391 |
Q |
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| T |
44146713 |
caccacaggtactaaatgttttgccaaagcatttcccgacagaaagagaagaacgtgctatctacactt |
44146781 |
T |
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