View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_low_43 (Length: 402)
Name: NF1114_low_43
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 166 - 392
Target Start/End: Complemental strand, 42285598 - 42285372
Alignment:
| Q |
166 |
ctcaatcaattgttcataaaaatataagagtagggtgttcaagtccttcaatatcaagattgagcttatttttatctactaatattaatttaggaggaag |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42285598 |
ctcaatcaattgttcataaaaatataagagtagggtgttcaagtccttcaatatcaagattgagcttatttttatctactaatattaatttaggaggaag |
42285499 |
T |
|
| Q |
266 |
tttatttagatttatctgctgaggaaaatattttttatattagtgtttaggtattatttctaaaatattttatgaaattcacgtnnnnnnntaataaaca |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42285498 |
tttatttagatttatctgctgaggaaaatattttttatattagtgtttaggtattatttctaaaatattttatgaaattcacgtaaaaaaataataaaca |
42285399 |
T |
|
| Q |
366 |
aaagctggttctagggtgttctctctg |
392 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
42285398 |
aaagctggttctagggtgttctctctg |
42285372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 42285724 - 42285661
Alignment:
| Q |
40 |
tattcgaatatatattgtatattaatcatgtcatatgtgcacaaagagtgatatgattcatctc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42285724 |
tattcgaatatatattgtatattaatcatgtcatgtgtgcacaaagagtgatatgattcatctc |
42285661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 41623273 - 41623306
Alignment:
| Q |
7 |
gattcatcaaagttttcctaatcagatgaatatt |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41623273 |
gattcatcaaagttttcctaatcagatgaatatt |
41623306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 41626234 - 41626267
Alignment:
| Q |
7 |
gattcatcaaagttttcctaatcagatgaatatt |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41626234 |
gattcatcaaagttttcctaatcagatgaatatt |
41626267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University