View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_44 (Length: 398)
Name: NF1114_low_44
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 48 - 386
Target Start/End: Complemental strand, 44109274 - 44108932
Alignment:
| Q |
48 |
cttgtatcgattctaagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaa |
147 |
Q |
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| T |
44109274 |
cttgtatcgattctaagtgtagatagcacattctcctctttctgttggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaa |
44109175 |
T |
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| Q |
148 |
gagatttcatatgcacttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgata-----gcgagccacaat |
242 |
Q |
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| T |
44109174 |
gagatttcatatgcacttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgatagcgaagcgagccacaat |
44109075 |
T |
|
| Q |
243 |
cgatgagaatgcttgctatttgattgttctcctgtagtatgtcatgccgagccaagtttctacattcattttgtcagaatgaagagtttcttaattttgt |
342 |
Q |
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|||||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44109074 |
cgatgagaatgcttgcta-ttgattattctccagtagtatgtcatgctgagccaagtttctacattcattttgtcagaatgaagagtttcttaattttgt |
44108976 |
T |
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| Q |
343 |
acaaggataaaaatgttgcaatttgtaagtgtgtaagagatatt |
386 |
Q |
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| T |
44108975 |
acaaggataaaaatgttgcaatttgtaagtgtgtaagagatatt |
44108932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 62 - 312
Target Start/End: Complemental strand, 44146781 - 44146531
Alignment:
| Q |
62 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgc |
161 |
Q |
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| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcatatgc |
44146682 |
T |
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| Q |
162 |
acttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgatagcgagccacaatcgatgagaatgcttgctat |
261 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
44146681 |
acttgaaattgtatttctgtgctttttgtatattcagtcatgacatttaagtgttaattatcgttgatgctgagccacaatcaatgagaatgcttgctat |
44146582 |
T |
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| Q |
262 |
ttgattgttctcctgtagtatgtcatgccgagccaagtttctacattcatt |
312 |
Q |
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|||||| ||| |||||||||| |||||| ||| || ||||| ||||||||| |
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| T |
44146581 |
ttgattattcccctgtagtatttcatgctgagtcaggtttcaacattcatt |
44146531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 366
Target Start/End: Complemental strand, 44145900 - 44145853
Alignment:
| Q |
319 |
gaatgaagagtttcttaattttgtacaaggataaaaatgttgcaattt |
366 |
Q |
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| T |
44145900 |
gaatgaagagtttcttcattttgtacaaggataaaaatgttgcaattt |
44145853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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