View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_45 (Length: 392)
Name: NF1114_low_45
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 29 - 384
Target Start/End: Complemental strand, 40698145 - 40697768
Alignment:
| Q |
29 |
aaattaaacatacacgtgctgatccacacaatgaggaaaatgagttagatcctcataatggcattaaaattagggtttgctaaagattaaaatgtgtatc |
128 |
Q |
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| T |
40698145 |
aaattaaacatacacgtgctgatccacacaatgaggaaaatgagttagatcctcataatggcattaaaattagggtttgctaaagattaaaatgtgtatc |
40698046 |
T |
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| Q |
129 |
tggccacatgtgtaacannnnnnnnnn----gagaggccacatgtataacatttagtacaggaccatatatacagctaattccaccaataggaataaaga |
224 |
Q |
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| T |
40698045 |
tggccacatgtgtaacattttttttttttttgagaggccacatgtataacatttagtacaggaccatatatacagctaattccaccaataggaataaaga |
40697946 |
T |
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| Q |
225 |
gaaagaaattttttcagaaaaga-----------------gaaagtaaattaaccaccaattacataag-acactatggttttcaaccaacaaatagacg |
306 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40697945 |
gaaagaaattttttcagaaaagaaaaaagagagagaaagagaaagtaaattaaccaccaattacataagcacactatggttttcaaccaacaaatagacg |
40697846 |
T |
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| Q |
307 |
cgttcctttctctatatattgcccaacctccctctactgtttccactcaaaatagatcaaaatcatccttttcatctc |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40697845 |
cgttcctttctctatatattgcccaacctccctctactgtttccactcaaaatagatcaaaatcatccttttcttctc |
40697768 |
T |
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