View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_48 (Length: 386)
Name: NF1114_low_48
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 118 - 379
Target Start/End: Complemental strand, 39883200 - 39882939
Alignment:
| Q |
118 |
aattaccctaggaccaaagctacttcgtatcttcacaatctcatgcatcacaagctttatgtttcattgatatagaccaatcacgatatattaacataaa |
217 |
Q |
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| T |
39883200 |
aattaccctaggaccaaagctacttcgtatcttcacaatctcatacatcacaagctttatgtttcattgatatagaccaatcacgatatattaacataaa |
39883101 |
T |
|
| Q |
218 |
gcttgtagcagcttcaaactactttgaagttgaagaacgtcctggtataaaactaccttcatgttgtgagaccacataaggcatgatattccttattcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39883100 |
gcttgtagcagcttcaaactactttgaagttgaagaacgtcctggtataaaactacttgcatgttgtgagaccacataaggcatgatattccttattcta |
39883001 |
T |
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| Q |
318 |
taagccaagatttttcaaattattttatagctcgcgttacataaagcaatgggtctgtggtg |
379 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
39883000 |
taagccaagattttttaaattattttatagctcacgttacataaagcaatgggtctgaggtg |
39882939 |
T |
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