View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_low_49 (Length: 385)
Name: NF1114_low_49
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 322
Target Start/End: Complemental strand, 34289542 - 34289250
Alignment:
| Q |
30 |
tttttagttggagtttacttgtgaaagacttttatttggaattgattttagtgttttatcaataatacaaatgacccctcgatttgatttttgctaaaat |
129 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34289542 |
tttttagttggagtttacttgtgtaagacttttatttggaattgattttactgttttatcaataatacaaatgacccctcgatttgatttttgctaaaat |
34289443 |
T |
|
| Q |
130 |
ttaatgcattggtatttatatttttatataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataaaaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34289442 |
ttaatgcattggtatttatatttttatataagaaaaaattatattaaagtgccaacattacattggtttgagtgtaacaaacttaaatttcttataaaaa |
34289343 |
T |
|
| Q |
230 |
gtcttaagttcggatcttgcgaatggagaaaatgtcgtttcgaaactcggtgttgaattaggttagtgttataattaaggtctgtaatactaa |
322 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| || | || ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
34289342 |
gtcttaagttcgaatcttgcgaatggagaaaatgtcgtttggagagtctgtgttgaattaagttagtgttataattaaggtctgtaacactaa |
34289250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 34301928 - 34301716
Alignment:
| Q |
30 |
tttttagttggagtttacttgtgaaagacttttatttggaattgattttagtgttttatcaataatacaaatgacccctcgatttgatttttgctaaaat |
129 |
Q |
| |
|
||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||||| | || || ||||| || ||||||||||| |||| || |
|
|
| T |
34301928 |
tttttggttggagtttacttctgtaaggcttttatttggaattgattttagtgttttatcaattaaactaacgacccttcaatttgatttttactaagat |
34301829 |
T |
|
| Q |
130 |
tta---atgcattggtatttatatttttatataagaaaaaattatattaaagtgctaacattacattggtttgagtgtaacaaacttgaatttcttataa |
226 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||| |||||||||| | || || |||||| |||||||||| ||||||||| ||||||| |||| | |
|
|
| T |
34301828 |
ttatttatgcattcgtatttatatttttatataag-aaaaattatagtgaaatggcaacattgcattggtttgcgtgtaacaagcttgaatcgcttaaga |
34301730 |
T |
|
| Q |
227 |
aaagtcttaagttc |
240 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
34301729 |
aaagtcttaagttc |
34301716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University