View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_5 (Length: 745)
Name: NF1114_low_5
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10818625 - 10818848
Alignment:
| Q |
1 |
attgctcggactctttgatctcttagttgtcattgatatttgccacacatgattttcttgatgtgattttttatcattatcagatatatggtgagacccc |
100 |
Q |
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| T |
10818625 |
attgctcggactctttgatctcttagttgtcattgatatttgccacacatgattttcttgatgtgattttttatcattatcagatatatggtgagacccc |
10818724 |
T |
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| Q |
101 |
tacnnnnnnnntatatggatatggtgagacatcaaagacataaatacctaaaaagaagtccaacgtataataaagctcgtgatcgggcaaagtttcattg |
200 |
Q |
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| T |
10818725 |
tacaaaaaaaatatatggatatggtgagacatcaaagacataaatacctaaaaagaagtccaacgtataataaagctcgtgatcgggcaaagtttcattg |
10818824 |
T |
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| Q |
201 |
gcgtgacccatgcaatcacaaagc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
10818825 |
gcgtgacccatgcaatcacaaagc |
10818848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 499 - 739
Target Start/End: Original strand, 10819126 - 10819364
Alignment:
| Q |
499 |
tattttagaaagaatggcgctttagtttgcggtgtaactttaatttagnnnnnnnnnnccttctaataaactttaatttagtttcaattatccaatatac |
598 |
Q |
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| T |
10819126 |
tattttagaaagaatgccgctttagtttgcggtgtaactttaatttagttttttttt--cttctaataaactttaatttagtttcaattattcaatatac |
10819223 |
T |
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| Q |
599 |
gtaattaataattaatatactcattcttttccaaaatacaaatcacagtttgatcatatacattattcatatatgttactatgaccatattctttattaa |
698 |
Q |
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| T |
10819224 |
gtaattaataattaatatactcattcttttccaaaatacaaatcacagtttgatcatatacattattcatatatcttactatgaccatattctttattaa |
10819323 |
T |
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| Q |
699 |
catatatcaaaataaatgttggtatataaaatattcttcga |
739 |
Q |
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| T |
10819324 |
catatatcaaaataaatgttggtatataaaatattgttcga |
10819364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 260 - 436
Target Start/End: Original strand, 10818884 - 10819059
Alignment:
| Q |
260 |
ggaaattcttatgtatttttcacaattctctacaaatatacaagcnnnnnnngtgaagtcagtttatgatccccacttagataagctaatgatattccat |
359 |
Q |
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| T |
10818884 |
ggaaattcttatgtatttttcacaattctctacaaatatacaagctttttt-gtgaagtcagtttatgatccccacttagataagctaatgatattccat |
10818982 |
T |
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| Q |
360 |
ccaagnnnnnnnggattttcataagatcccctnnnnnnnntacatattacataagatataaacagtttattttttgt |
436 |
Q |
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| T |
10818983 |
ccaagtttttttggattttcataagatcccctaaaaaaaatacatattacataagatataaacagttttttttttgt |
10819059 |
T |
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