View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_6 (Length: 644)
Name: NF1114_low_6
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 40 - 634
Target Start/End: Original strand, 51688399 - 51688995
Alignment:
| Q |
40 |
catgagacccctcttgggggg--ttctgttaaacgattccatatttttccttacttcattcaccagttacatcacctacagttattattagggacaaggt |
137 |
Q |
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| T |
51688399 |
catgagacccctcttggggggggttctgttaaacgattccatatttttccttacttcattcaccagttacatcacctacagttattattagggacaaggt |
51688498 |
T |
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| Q |
138 |
aacatgcatcatgtacaaaagtacaaccacagcaaacatttaagtactttgcatgctggcgctaaatttgcatt------------ctctctctttccca |
225 |
Q |
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| T |
51688499 |
aacatgcatcatgtacaaaagtacaaccacagcaaacatttaagtactttgtatgctggcgctaaatttgcattttagttacacctctctctctttccca |
51688598 |
T |
|
| Q |
226 |
cgggtccttaatcagtgcccaggatactagttagcattttccatattttttaagtcacaatagaaaatattgtagtaatttgtttgatgtatcaaaatta |
325 |
Q |
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| T |
51688599 |
cgggtccttaattagtgcccagagtactagttagcattttccatattttttaagtcacaatagaaaatattgtagtaatttgtttgatgtatcaaaatta |
51688698 |
T |
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| Q |
326 |
aactctaataatagtgcctgaaattctccattgctccttcatttattttggcattgaagaatctatgtcctctctttgtcaaaaacaaagcaatttgcat |
425 |
Q |
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| T |
51688699 |
aactctaataatagtgcctgaaattctccattgctccttcatttattttggcattgaagaatctatgtcctctctttgtcaaaaacaaagcaatttgcat |
51688798 |
T |
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| Q |
426 |
cggtcaacaaaatggtcaagtaaataaatatatttatcttggttgttggctaggggtgagaacatgctattctgaattttgatgcagctgagcctgagcc |
525 |
Q |
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| T |
51688799 |
cggtcaacaaaatggtcaagtaaataaatatatttatcttggttgttggctaggggtgagaacatgctattctgaattttgatgcag------------c |
51688886 |
T |
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| Q |
526 |
tgagcctgagccacataatatattacagtaaggacactgaactgtatatgtaaaatttataaacaacctgcagaagaggtagctacagaaaaaggttgat |
625 |
Q |
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| T |
51688887 |
tgagcctgagccacataatatattacagtaaggacactgaactgtatatgtaaaatttataaacaacctgcagaagaggtagctacagaaaaaggttgat |
51688986 |
T |
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