View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_60 (Length: 373)
Name: NF1114_low_60
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 119 - 352
Target Start/End: Complemental strand, 2433182 - 2432949
Alignment:
| Q |
119 |
tatcgtaacacaaacacttccggtgatgtctcgtggtatcagccacatttcactaataacacatgttattacatttaactaattcattttcttaaattat |
218 |
Q |
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| T |
2433182 |
tatcgtaacaccaacacttccggtgatgtctcgtggtatcagccacatttcattaataacacatgttattacatttaactaatttattttcttaaattat |
2433083 |
T |
|
| Q |
219 |
tatcggtattagaattgttgatagaataagaaatacaataaaacttgtaccgtcaatccgaacaactaactagttagtcttactaactactaagactgat |
318 |
Q |
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| T |
2433082 |
tatcggtattagaattgttgatagaataagaaatacaatataacttgtaccgtcaatccgaacaactaactagttagtcttactaactactaagactgat |
2432983 |
T |
|
| Q |
319 |
attgtatctaacagcggtgtcgatgtatccgtgt |
352 |
Q |
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| T |
2432982 |
attgtatctaatagcggtgtcgatgtatccgtgt |
2432949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 2433305 - 2433215
Alignment:
| Q |
30 |
aagcttgctctcatgcattcccccatgtaataactttcttcacgtttacaatgccctccacctgttcgattatttgtaattataatattta |
120 |
Q |
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| T |
2433305 |
aagcttgctctcatgcattcccccatgtaataactttcttcacgtttacaatgccctccacctgttcgattatttgtaattataatattta |
2433215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 14732937 - 14732884
Alignment:
| Q |
175 |
taacacatgttattacatttaactaattcattttcttaaattattatcggtatt |
228 |
Q |
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| T |
14732937 |
taacacatgttattacatttaattaattcattttcttaaattatcaccggtatt |
14732884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 28369813 - 28369858
Alignment:
| Q |
177 |
acacatgttattacatttaactaattcattttcttaaattattatc |
222 |
Q |
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| T |
28369813 |
acacatgttattacatttatttaattcattttctcaaattattatc |
28369858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 42043208 - 42043253
Alignment:
| Q |
180 |
catgttattacatttaactaattcattttcttaaattattatcggt |
225 |
Q |
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|||||||||||||| || ||||||||||| |||||||||||||||| |
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| T |
42043208 |
catgttattacattcaattaattcattttattaaattattatcggt |
42043253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 35198240 - 35198280
Alignment:
| Q |
178 |
cacatgttattacatttaactaattcattttcttaaattat |
218 |
Q |
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||||||| |||||||| || ||||||||||||||||||||| |
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| T |
35198240 |
cacatgtgattacattcaattaattcattttcttaaattat |
35198280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 34625788 - 34625737
Alignment:
| Q |
174 |
ataacacatgttattacatttaactaattcattttcttaaattattatcggt |
225 |
Q |
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|||||| |||| |||||||| || ||||||||||||| |||||||||||||| |
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| T |
34625788 |
ataacatatgtgattacattcaattaattcattttctcaaattattatcggt |
34625737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 20119998 - 20119949
Alignment:
| Q |
175 |
taacacatgttattacatttaactaattcattttcttaaattattatcgg |
224 |
Q |
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|||||||||| |||||||| || || |||||||||| ||||||||||||| |
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| T |
20119998 |
taacacatgtgattacattaaattatttcattttctcaaattattatcgg |
20119949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 26462653 - 26462698
Alignment:
| Q |
177 |
acacatgttattacatttaactaattcattttcttaaattattatc |
222 |
Q |
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|||||||| |||||||| || || |||||||||||||||||||||| |
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| T |
26462653 |
acacatgtgattacattcaattatttcattttcttaaattattatc |
26462698 |
T |
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