View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_low_61 (Length: 368)

Name: NF1114_low_61

Description: NF1114

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1114_low_61

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 205; E-Value: 1e-112

Query Start/End: Original strand, 117 - 368

Target Start/End: Original strand, 37134388 - 37134651

Alignment:

Q	117	tcttgttatcccattctacatgtgggtgttaatcttttttattattttcaatgtttcctgagtttattgtgtatgcatgtaaaaggtttcgtctgtcact	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37134388	tcttgttatcccattctacatgtgggtgttaatctttt-tattattttcaatgtttcctgagtttattgtgtatgcatgtaaaaggtttcgtctgtcact	37134486	T

Q	217	agaattatgaagttactttatttttattgttttctttaccgttttcaatttggtttaattatgttgcaatactctaacattgtgtgtgtatatatgatgt	316	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37134487	agaattatgaagttactttatttttattgttttctttaccgttttcaatttggtttaattatgttgcaattctctaatattgtgtgtgtatatatgatgt	37134586	T

Q	317	atactt-------------tttggattgaaattttatatcatatagattatctctataaatatat	368	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37134587	atactttacaaaatttatctttggattgaaattttatatcatatagattatctctataaatatat	37134651	T

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Target: chr8; HSP #2

Raw Score: 32; E-Value: 0.000000008

Query Start/End: Original strand, 324 - 363

Target Start/End: Original strand, 13055225 - 13055264

Alignment:

Q	324	ttggattgaaattttatatcatatagattatctctataaa	363	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	13055225	ttggattgaaattttatattatatagatcatctctataaa	13055264	T

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