View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_63 (Length: 362)
Name: NF1114_low_63
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 1506421 - 1506734
Alignment:
| Q |
13 |
aatatatcatttataattaagaagtaaatcgtgtttgcatataaaagacaacaagttagatgattgatacaagtaaattatatt------------aatg |
100 |
Q |
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| T |
1506421 |
aatatatcatttataattaagaagtaaatcgtgtttgcatataaaagacaacaagttagatgattgatacaagtaaattacattttaatatgcagtaatg |
1506520 |
T |
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| Q |
101 |
tataatctgtgcactcttcaaatttttagtgtttgaaactaattataaatatatgtactatgttttgttttgcaacaacaaaagataattttattagtct |
200 |
Q |
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| T |
1506521 |
tataatctatgcactcttcaaattttta-------------------aatatatgtactatgttttgttttgcaacaacaaaagataattttattagtct |
1506601 |
T |
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| Q |
201 |
aaacagagtcaatccagtaagttcaaattgcaattttgttaagtttttcttggttattattatttaaagttgattcatcctggttgcttttcattcttgc |
300 |
Q |
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| T |
1506602 |
aaacagagtcaatccagtaagttcaaattgcaattttgttaagtttttcttggttattattatttaaagttgattcatcctagttgcttttcattcttgc |
1506701 |
T |
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| Q |
301 |
actttcttgaagtatttgagcagaggttatcat |
333 |
Q |
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| T |
1506702 |
actttcttgaagtatttgagcagaggttatcat |
1506734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 1501853 - 1501901
Alignment:
| Q |
285 |
tgcttttcattcttgcactttcttgaagtatttgagcagaggttatcat |
333 |
Q |
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| T |
1501853 |
tgcttttcatttttgcacgttcttgaagtatttgagcatagcttatcat |
1501901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 44142344 - 44142455
Alignment:
| Q |
108 |
tgtgcactcttcaaatttttagtgtttgaaactaattataaatatatgtactatgttttgttttgcaacaacaaaagataattttattagtctaaacaga |
207 |
Q |
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| T |
44142344 |
tgtgcactcttcgaactcttagtatttgaaactaattttaaatatctgtactatgttccattttgcaacaacaaaagataattttattactctaaacaga |
44142443 |
T |
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| Q |
208 |
gtcaatccagta |
219 |
Q |
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| T |
44142444 |
gacaatccagta |
44142455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 44133967 - 44134027
Alignment:
| Q |
156 |
tactatgttttgttttgcaacaacaaaagataattttattagtctaaacagagtcaatccagta |
219 |
Q |
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| T |
44133967 |
tactatgttttattttgcaacaacaaaag---attttattactctaaacagagacaatccagta |
44134027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 44129768 - 44129827
Alignment:
| Q |
154 |
tgtactatgttttgttttgcaacaacaaaagataattttattagtctaaacagagtcaatcca |
216 |
Q |
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| T |
44129768 |
tgtactatgttttattttgaaacaacaaaag---attttattactctaaacagaaacaatcca |
44129827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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