View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1114_low_65 (Length: 355)

Name: NF1114_low_65
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1114_low_65
NF1114_low_65
[»] chr5 (1 HSPs)
chr5 (13-326)||(11634935-11635248)
[»] chr3 (13 HSPs)
chr3 (203-318)||(30201152-30201267)
chr3 (220-268)||(30239063-30239111)
chr3 (205-268)||(29649063-29649126)
chr3 (212-318)||(29856825-29856931)
chr3 (65-159)||(29856996-29857090)
chr3 (213-263)||(30227382-30227432)
chr3 (213-266)||(29751882-29751935)
chr3 (206-254)||(30223140-30223188)
chr3 (207-255)||(36333932-36333980)
chr3 (229-263)||(30214753-30214787)
chr3 (205-242)||(29713035-29713072)
chr3 (205-254)||(30230381-30230430)
chr3 (207-255)||(36313855-36313903)
[»] chr6 (2 HSPs)
chr6 (214-317)||(5569421-5569524)
chr6 (230-317)||(5574415-5574502)
[»] chr8 (1 HSPs)
chr8 (212-266)||(1152919-1152973)
[»] chr7 (2 HSPs)
chr7 (207-268)||(16644731-16644792)
chr7 (207-268)||(17619092-17619153)
[»] chr1 (1 HSPs)
chr1 (220-256)||(16955668-16955704)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 11635248 - 11634935
Alignment:
Q  13 aatataagcaattgaaatatatacaagaaaaaagattcttttatcaattattattacttctcaactatgaattcaaggagctcatctgtggcaaaatact 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11635248 aatatacgcaattgaaatatatacaagaaaaaagattcttttatcaattattattacttctcaactatgaattcaaggagctcatctgtggcaaaatact 11635149  T
Q  113 caacagaaatctcttctaaatgaccgcagcttcgttcaacagcataatgacagatctctggcaaatttgcattaaagtaactgcaatcacctatcatgcg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  11635148 caacagaaatctcttctaaatgaccgcagcttcgttcaacagcataatgacagatctctgggaaatttgcattaaagtaactgcgttcacctatcatgcg 11635049  T
Q  213 aatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgccttttctactatatcaatggtataaagcctctgaaga 312  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||| |||||||||| ||||||| |||||    
T  11635048 aatggtacgccacatgagaggatccttgcatatgctccaccatagaggacatactatacatgcattttttactatgtcaatggtatcaagcctccgaaga 11634949  T
Q  313 atgtttcttatgat 326  Q
    |||||| |||||||    
T  11634948 atgtttgttatgat 11634935  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 30201267 - 30201152
Alignment:
Q  203 ctatcatgcgaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgc-cttttctactatatcaatggtataaa 301  Q
    |||||||  |||||||  |||||||||||||||||||||| |||||||||||||||||||| |||  |||||| ||| || || || |||||||||  ||    
T  30201267 ctatcatatgaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtc-acaatttcaatggtactaa 30201169  T
Q  302 gcctctgaagaatgttt 318  Q
    |||| ||||||||||||    
T  30201168 gcctttgaagaatgttt 30201152  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 30239111 - 30239063
Alignment:
Q  220 cgccacatgagaggatccttgcatatgttccaccatagaggacaaacta 268  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30239111 cgccacatgagaggatccttgcatatgttccaccatagaggacatacta 30239063  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 29649126 - 29649063
Alignment:
Q  205 atcatgcgaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaacta 268  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||| ||||    
T  29649126 atcatgtgaatggtacgccacatgagaggatccttacaaatgttccacgatagaggacatacta 29649063  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 29856931 - 29856825
Alignment:
Q  212 gaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgc-cttttctactatatcaatggtataaagcctctgaa 310  Q
    ||||||||||||||| ||||||||| || ||||||| |||||||||||||||||||  |||||| |||||| || || ||||| |||| |||||| ||||    
T  29856931 gaatggtacgccacaggagaggatctttacatatgtcccaccatagaggacaaacttgacatgcacttttc-acgatttcaattgtatcaagcctttgaa 29856833  T
Q  311 gaatgttt 318  Q
    | ||||||    
T  29856832 ggatgttt 29856825  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 29857090 - 29856996
Alignment:
Q  65 attacttctcaactatgaattcaaggagctcatctgtggcaaaatactcaacagaaatctcttctaaatgaccgcagcttcgttcaacagcataa 159  Q
    ||||||||||| |||||||||||||||| ||||| ||  || ||||||||| |   || ||||| | ||||||||| ||||||||||||||||||    
T  29857090 attacttctcagctatgaattcaaggagttcatcagttacagaatactcaatattgatgtcttcaagatgaccgcaacttcgttcaacagcataa 29856996  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 30227432 - 30227382
Alignment:
Q  213 aatggtacgccacatgagaggatccttgcatatgttccaccatagaggaca 263  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  30227432 aatggtgcgccacatgagaggatccttgcaaatgttccactatagaggaca 30227382  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 29751935 - 29751882
Alignment:
Q  213 aatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaac 266  Q
    |||||||| ||||||||||||||||||||| | ||||||||| |||||||||||    
T  29751935 aatggtactccacatgagaggatccttgcaaacgttccaccaaagaggacaaac 29751882  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 30223188 - 30223140
Alignment:
Q  206 tcatgcgaatggtacgccacatgagaggatccttgcatatgttccacca 254  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  30223188 tcatgtgaatggtgcgccacatgagaggatccttgcaaatgttccacca 30223140  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 36333932 - 36333980
Alignment:
Q  207 catgcgaatggtacgccacatgagaggatccttgcatatgttccaccat 255  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  36333932 catgcgaatagtgcgccacatgagaggatccttgcaaatgttccaccat 36333980  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 30214787 - 30214753
Alignment:
Q  229 agaggatccttgcatatgttccaccatagaggaca 263  Q
    |||||||||||||| ||||||||||||||||||||    
T  30214787 agaggatccttgcaaatgttccaccatagaggaca 30214753  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 29713072 - 29713035
Alignment:
Q  205 atcatgcgaatggtacgccacatgagaggatccttgca 242  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  29713072 atcatgtgaatggtacgccacattagaggatccttgca 29713035  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 30230430 - 30230381
Alignment:
Q  205 atcatgcgaatggtacgccacatgagaggatccttgcatatgttccacca 254  Q
    |||||| ||||||| ||||||||| ||||||||||||| ||| |||||||    
T  30230430 atcatgtgaatggtgcgccacatgcgaggatccttgcaaatgctccacca 30230381  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 36313855 - 36313903
Alignment:
Q  207 catgcgaatggtacgccacatgagaggatccttgcatatgttccaccat 255  Q
    ||||||||| || ||||||||||||||||||||||| || ||| |||||    
T  36313855 catgcgaatagtgcgccacatgagaggatccttgcaaatcttcaaccat 36313903  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 317
Target Start/End: Original strand, 5569421 - 5569524
Alignment:
Q  214 atggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaactatacatgccttttctactatatcaatggtataaagcctctgaagaa 313  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||| |||  ||||||  ||  ||||| |||||| |||| |||||| ||||| |    
T  5569421 atggtacgccacacaagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaagga 5569520  T
Q  314 tgtt 317  Q
    ||||    
T  5569521 tgtt 5569524  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 317
Target Start/End: Original strand, 5574415 - 5574502
Alignment:
Q  230 gaggatccttgcatatgttccaccatagaggacaaactatacatgccttttctactatatcaatggtataaagcctctgaagaatgtt 317  Q
    ||||||||||||| |||||||||||||||||||| |||  ||||||  ||  ||||| |||||| |||| |||||| ||||| |||||    
T  5574415 gaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgttactacatcaatagtatcaagcctttgaaggatgtt 5574502  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 1152919 - 1152973
Alignment:
Q  212 gaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaac 266  Q
    |||||||||||||||| |||||||||||||| |||| |||||| |||||||||||    
T  1152919 gaatggtacgccacattagaggatccttgcaaatgtgccaccacagaggacaaac 1152973  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 16644731 - 16644792
Alignment:
Q  207 catgcgaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaacta 268  Q
    |||| ||||||| |||||||||||||| |||||||| |||||||||||||||| ||| ||||    
T  16644731 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacacta 16644792  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 17619092 - 17619153
Alignment:
Q  207 catgcgaatggtacgccacatgagaggatccttgcatatgttccaccatagaggacaaacta 268  Q
    |||| ||||||| |||||||||||||| |||||||| |||||||||||||||| ||| ||||    
T  17619092 catgtgaatggtgcgccacatgagaggttccttgcaaatgttccaccatagagcacacacta 17619153  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 16955668 - 16955704
Alignment:
Q  220 cgccacatgagaggatccttgcatatgttccaccata 256  Q
    ||||||||||||||||||||||| || ||||||||||    
T  16955668 cgccacatgagaggatccttgcaaatattccaccata 16955704  T

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