View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_68 (Length: 348)
Name: NF1114_low_68
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 39883098 - 39883415
Alignment:
| Q |
30 |
agctttatgttaatatatcgtgattggtctatatcaatgaaacataaagcttgtgatgcatgagattgtgaagatacgaagtagctttggtcctagggta |
129 |
Q |
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| T |
39883098 |
agctttatgttaatatatcgtgattggtctatatcaatgaaacataaagcttgtgatgtatgagattgtgaagatacgaagtagctttggtcctagggta |
39883197 |
T |
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| Q |
130 |
attaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaatggaacttgaagtgcatggaaattgttaatataccttgagatt |
229 |
Q |
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| T |
39883198 |
attaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaatggaacttgacgtgcaaggaaattgttaatataccttgagatt |
39883297 |
T |
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| Q |
230 |
ggtctatattttttggagttatggtgtggattctttggaaggacatgaacatgctcatattttctcatcagtcatatacgggagataaactatggagttc |
329 |
Q |
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| T |
39883298 |
ggtctatattttttggagttatggtgtggactctttggaaggacatgaacatgctcatattttctcatcagtcatatatgggagataaactatggagttc |
39883397 |
T |
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| Q |
330 |
ggttaacaatcacgtcat |
347 |
Q |
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| T |
39883398 |
ggttaacaatcacgtcat |
39883415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 272
Target Start/End: Complemental strand, 40645543 - 40645364
Alignment:
| Q |
91 |
gagattgtgaagatacgaagtagctttggtcctagggtaattaaagaagaacattggagtaagttctttggtctcgaactttttgtttggattaaatgga |
190 |
Q |
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| T |
40645543 |
gagattgtgaggacactaaggagctttggtca-agggtcataaaagaagaatattggagttagttctccaggctcgatctttttgtttggattgaatgga |
40645445 |
T |
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| Q |
191 |
acttgaagtgcatggaaattgttaatataccttgagattggtctatattttttggagttatggtgtggattctttggaagga |
272 |
Q |
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| T |
40645444 |
acttaacgtgtaaggagaatgataattta-cttgggattggtatattttctttggagtcatggtgtgggatctttcgaagga |
40645364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 36826426 - 36826512
Alignment:
| Q |
169 |
ctttttgtttggattaaatggaacttgaagtgcatggaaattgttaatataccttgagattggtctatattttttggagttatggtg |
255 |
Q |
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| T |
36826426 |
ctttttgcttggattgaatagaacttgacgtgtaaggacattggtaatgtaacttgagattgttctatcttctttggagttatggtg |
36826512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 42874636 - 42874702
Alignment:
| Q |
278 |
acatgctcatattttctcatcagtcatatacgggagataaactatggagttcggttaacaatcacgt |
344 |
Q |
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| T |
42874636 |
acatgctcatattttcttattggtcaaatatggaagataaactatggaattcagttaacaataacgt |
42874702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 24352080 - 24352009
Alignment:
| Q |
228 |
ttggtctatattttttggagttatggtgtggattctttggaaggacatgaacatgctcatattttctcatca |
299 |
Q |
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| T |
24352080 |
ttggtctatcttctttgaagttatggtgtgggttctttagaatgataggaacatgttcatattttctcatca |
24352009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 298
Target Start/End: Complemental strand, 42502625 - 42502497
Alignment:
| Q |
170 |
tttttgtttggattaaatggaacttgaagtgcatggaaattgttaatataccttgagattggtctatattttttggagttatggtgtggattctttggaa |
269 |
Q |
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||||||||| ||| |||||||||||| ||| | | |||| |||| ||||||| |||||| ||| || || ||||| |||||||| || ||||||| |
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| T |
42502625 |
tttttgtttaaattgaatggaacttgacgtgtaattacattggtaatctaccttggaattggtttatcttcttcagagttttggtgtgggttgtttggaa |
42502526 |
T |
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| Q |
270 |
ggacatgaacatgctcatattttctcatc |
298 |
Q |
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| T |
42502525 |
ggatataaatatgctcatattttctcatc |
42502497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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