View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_69 (Length: 346)
Name: NF1114_low_69
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_69 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 108 - 275
Target Start/End: Complemental strand, 25588182 - 25588015
Alignment:
| Q |
108 |
ttgtttcaactccattttatccgaacatgtttagtttttatatttaacttttaaaatcaaaaaattgagaccaccttgaccccttagcttttttgacaaa |
207 |
Q |
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| T |
25588182 |
ttgtttcaactccattttatccgaacatgtttagtttttatatttaacgtttgaaatcaaaaaatttagaccaccttgaccccttagcttttttgacaaa |
25588083 |
T |
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| Q |
208 |
ggatggttatagcataccattaatcaagatatgttcaatacaatatggtatatcaactagtattcaga |
275 |
Q |
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| T |
25588082 |
ggatggttatagcataccattaatcaagatatgttcaatacaatatggtatatcaactagtattcaga |
25588015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 25588276 - 25588209
Alignment:
| Q |
14 |
aggtggatggagtgttgatcaggagcggtggtggtagtcggcgaccactagtagtgacaagttacatt |
81 |
Q |
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| T |
25588276 |
aggtggatggagtgttgatcaggagcagtggtggtagtcggcgaccactagtagtgacaagttacatt |
25588209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 44109197 - 44109271
Alignment:
| Q |
272 |
cagatactaaatgttttgccaaaccattttccgacagaaagaggagaatgtgctatctacacttagaatcgatac |
346 |
Q |
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| T |
44109197 |
cagatactaaatgttttgccaaaccattttccaacagaaagaggagaatgtgctatctacacttagaatcgatac |
44109271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 44146722 - 44146781
Alignment:
| Q |
276 |
tactaaatgttttgccaaaccattttccgacagaaagaggagaatgtgctatctacactt |
335 |
Q |
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| T |
44146722 |
tactaaatgttttgccaaagcatttcccgacagaaagagaagaacgtgctatctacactt |
44146781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 10420961 - 10421001
Alignment:
| Q |
218 |
agcataccattaatcaagatatgttcaatacaatatggtat |
258 |
Q |
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| T |
10420961 |
agcatatcattaatcaaaatgtgttcaatacaatatggtat |
10421001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 16985626 - 16985574
Alignment:
| Q |
214 |
ttatagcataccattaatcaagatatgttcaatacaatatggtatatcaacta |
266 |
Q |
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| T |
16985626 |
ttatagcatttcattaatcaaaatatgttcaatacaatttggtatattaacta |
16985574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 15851728 - 15851778
Alignment:
| Q |
120 |
cattttatccgaacatgtttagtttttatatttaacttttaaaatcaaaaa |
170 |
Q |
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| T |
15851728 |
cattttacccgaacatgttttgttttcaaatttaacttttaaaaccaaaaa |
15851778 |
T |
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