View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_low_7 (Length: 584)
Name: NF1114_low_7
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 48 - 569
Target Start/End: Complemental strand, 44109274 - 44108749
Alignment:
| Q |
48 |
cttgtatcgattctaagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaa |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44109274 |
cttgtatcgattctaagtgtagatagcacattctcctctttctgttggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaa |
44109175 |
T |
|
| Q |
148 |
gagatttcatatgcacttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgatagcga-----gccacaat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44109174 |
gagatttcatatgcacttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgatagcgaagcgagccacaat |
44109075 |
T |
|
| Q |
243 |
cgatgagaatgcttgctatttgattgttctcctgtagtatgtcatgccgagccaagtttctacattcattttgtcagaatgaagagtttcttaattttgt |
342 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44109074 |
cgatgagaatgcttgctatt-gattattctccagtagtatgtcatgctgagccaagtttctacattcattttgtcagaatgaagagtttcttaattttgt |
44108976 |
T |
|
| Q |
343 |
acaaggataaaaatgttgcaatttgtaagtgtgtaagagatattgtttgagtattacacacgatctcctgcactctacctttcccatttcatcatccatc |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44108975 |
acaaggataaaaatgttgcaatttgtaagtgtgtaagagatattgtttgagtattacacatgatctcctgcactctacctttcccatttcatcatccatc |
44108876 |
T |
|
| Q |
443 |
gaagttcaattttttcgttgtgacgaacaaagagtgtcacaaatcaataatggtgtattgtttatcagcctttgttcttatttgggaaacaagagttcca |
542 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44108875 |
gaagttcaattttttcgttgtggcgaacaaagagtgtcacaaatcaataatggtgtattgtttatcagcctttgttcttatttgggaaacaagagttcca |
44108776 |
T |
|
| Q |
543 |
tatactttcgtgcttgtagctatcaat |
569 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
44108775 |
tatactttcgtgcttgtagctatcaat |
44108749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 62 - 312
Target Start/End: Complemental strand, 44146781 - 44146531
Alignment:
| Q |
62 |
aagtgtagatagcacattctcctctttctgtcggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgc |
161 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
44146781 |
aagtgtagatagcacgttcttctctttctgtcgggaaatgctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcatatgc |
44146682 |
T |
|
| Q |
162 |
acttgaaattgtatttgtgtactttttgtatattcagtcatgacatttaagtgttaattatcattgatagcgagccacaatcgatgagaatgcttgctat |
261 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
44146681 |
acttgaaattgtatttctgtgctttttgtatattcagtcatgacatttaagtgttaattatcgttgatgctgagccacaatcaatgagaatgcttgctat |
44146582 |
T |
|
| Q |
262 |
ttgattgttctcctgtagtatgtcatgccgagccaagtttctacattcatt |
312 |
Q |
| |
|
|||||| ||| |||||||||| |||||| ||| || ||||| ||||||||| |
|
|
| T |
44146581 |
ttgattattcccctgtagtatttcatgctgagtcaggtttcaacattcatt |
44146531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 395
Target Start/End: Complemental strand, 44145900 - 44145821
Alignment:
| Q |
319 |
gaatgaagagtttcttaattttgtacaaggataaaaatgttgcaattt---gtaagtgtgtaagagatattgtttgagta |
395 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
44145900 |
gaatgaagagtttcttcattttgtacaaggataaaaatgttgcaatttcactaaagtgtgtaagaaatattgtttgagta |
44145821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University