View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1114_low_71 (Length: 344)
Name: NF1114_low_71
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_71 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 91 - 332
Target Start/End: Complemental strand, 7929618 - 7929369
Alignment:
| Q |
91 |
tctctattatctattgtaatagcaatgctt--------accttaagcattacacttccagtaaaagatgggacctcaatagttgcccccaaaatcgcctg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7929618 |
tctctattatctattgtaatagcaatgctttgttgcttaccttaagcattacacttccagtaaaagatgggacctcaatagttgcccccaaaatcgcctg |
7929519 |
T |
|
| Q |
183 |
aaacaaattttaaaagaaaaacaaagttccagctatttaggttatttacagttattataaactaataatatcaataaattttacacaaacaactaacaag |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
7929518 |
aaacaaattttaaaagaaaaacaaagttccagctatttaggttatttacggttattataaactaataatatcaataaatgttacacaaacaacaaacaag |
7929419 |
T |
|
| Q |
283 |
ttgtttgagatgagtcnnnnnnncaaacaaaatgttcgggatcaaagtat |
332 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7929418 |
ttgtttgagatgagtcaaaaaaacaaacaaaatgttcgggatcaaagtat |
7929369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 7942221 - 7942109
Alignment:
| Q |
95 |
tattatctattgtaatagcaatgcttaccttaagcattacacttcc---agtaaaagatgggacctcaatagttgcccccaaaatcgcctgaaacaaat- |
190 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| | |||||||||||| |||||||||||||||||| || ||||||| |||||||||||||| |||| |
|
|
| T |
7942221 |
tattatgtattgaaatagcaatgcttaccttgatcattacacttccggtagtaaaagatgggacctcgatgattgcccctaaaatcgcctgaaataaata |
7942122 |
T |
|
| Q |
191 |
tttaaaagaaaaa |
203 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7942121 |
tttaaaagaaaaa |
7942109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 37218107 - 37218192
Alignment:
| Q |
10 |
atcctagaacattctgagtaattttattttcaannnnnnnagaggtttctttacaatcatttgttgaacgctagataaacatctct |
95 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37218107 |
atcctagaacattatgagtaattttattttcattttttttagaggtttctttataatcatttgttgaacgctagataaacatctct |
37218192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University