View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_77 (Length: 337)
Name: NF1114_low_77
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 4351155 - 4351448
Alignment:
| Q |
30 |
gtttttgtgatgcaacttattaagagatgttaatcatttcaaaaatgaattatattgtgaagaagtggcttggatggtccaagtggtactgagaaatcag |
129 |
Q |
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| T |
4351155 |
gtttttgtgatgcaacttattaagagatgttaatcatttcaaaaatgaattatattgtgaagaagtggcttggatggtccaagtggtactgagaaatcag |
4351254 |
T |
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| Q |
130 |
acagtgactggacatcagttatttaaccagttctaggaagtgaccgttagagttgtcgataacatattgggaagaacagtggtctactacactacaatgg |
229 |
Q |
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| T |
4351255 |
acagggactggacatcagttatttaaccagttctaggaagtgaccgttagagttgtcgataacatattgggaagaacagtggtctactacactacaatgg |
4351354 |
T |
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| Q |
230 |
tatagtgccgctatagccactatttgacatcacgttatactactaacgtatcgcggaacaatagcgatttgttctaattccgcttcgacatagt |
323 |
Q |
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| T |
4351355 |
tatagtgccgctatagccactatttgacatcacgttatactactaatgtatcgcggaacaatagggatttgttctaattccgctacgacatagt |
4351448 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 1813362 - 1813268
Alignment:
| Q |
216 |
ctacactacaatggtatagtgccgctatagccactatttgacatcacgttatactactaacgtatcgcggaacaatagcgatttgttctaattcc |
310 |
Q |
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| T |
1813362 |
ctacagtacagtgttatagtgccgctatagccactatttgacaacacttcgtgctaatggcatatcgcggaacaatagtgatttgttcaaattcc |
1813268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 47847979 - 47848056
Alignment:
| Q |
237 |
ccgctatagccactatttgacatcacgttatactactaacgtatcgcggaacaatagcgatttgttctaattccgctt |
314 |
Q |
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| T |
47847979 |
ccgctatagccgctatttgacaacattttgtacaaatggcatatcgtggaacaatagcgatttgttcaaattccgctt |
47848056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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