View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_8 (Length: 580)
Name: NF1114_low_8
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_8 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 127 - 489
Target Start/End: Complemental strand, 53931772 - 53931405
Alignment:
| Q |
127 |
gaacctgtgggaccatttgttcttgttgaagttgagtttgtggaacaaaggtacaaggcacactgtgtacagaattcatgatcacaacctacattatcaa |
226 |
Q |
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| T |
53931772 |
gaacctgggggaccatttgttcttgttgaagttgagtttgtggaacaaaggtacaaggcacactgtgtacagaattcatgatcacaacctacatcatcaa |
53931673 |
T |
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| Q |
227 |
tttatcatatgcattagtccacataaatagtaatttc----------------cgatgtcataggtctatggggtgtcacattaacaatattggtttagt |
310 |
Q |
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| T |
53931672 |
tttatcatatgcattagtccacataaatagtaatttccgataacaataatttccgatgtcataggtctatggggtgtcagattaacaatattggtttagt |
53931573 |
T |
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| Q |
311 |
gtttgagttgacaacgtatatgacaaaatcgcgcgtaggaccactgtaacttagctgcacttagtttcaacaaaatcacattgtcatggtgaattcatca |
410 |
Q |
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| T |
53931572 |
gtttgagttgacaacgtatatgacaaaatcgcg----------ctgtaacttagctgcacttagtttcaacaaaatcacattgtcatggtgaattcatca |
53931483 |
T |
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| Q |
411 |
aactcagcgtcaatccaaacatgcattgaattgattgtttttattttctatttctactagagtattttgggttctaatg |
489 |
Q |
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| T |
53931482 |
aactcagcgtcaatccaaacatgcattgaa-tgattgtttttattttctatttctactagagtattttgggttctaatg |
53931405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 436
Target Start/End: Original strand, 41696754 - 41696813
Alignment:
| Q |
377 |
tcaacaaaatcacattgtcatggtgaattcatcaaactcagcgtcaatccaaacatgcat |
436 |
Q |
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| T |
41696754 |
tcaacaaaatcacattgtcatcgtgatttcgttaaactcactgtcattccaaacatgcat |
41696813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 14709 - 14640
Alignment:
| Q |
50 |
tacatgaccaaccttgtggtagtgggctcgcggctgcaggtggtcgccgacatcaaatgagacgcagtga |
119 |
Q |
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| T |
14709 |
tacatgaccaaccttgtggtagtgggttcgcggctgcaggtggtcgccgacatcaaatgagatgcagtga |
14640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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