View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_84 (Length: 321)
Name: NF1114_low_84
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_84 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 2018745 - 2018456
Alignment:
| Q |
32 |
agcagagatcgagttcctgaattcctttgaacgacagtctataaaggaagaggtcgaaagcatcttcttcgacgtcctcgaactcgaaggtaaaatggga |
131 |
Q |
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| T |
2018745 |
agcagagatcgagttcctgaattcctttgaacgacagtctataaaggaagaggtcgaaagcatcttcttcgacgtcctcgaactcgaaggtaaaatggga |
2018646 |
T |
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| Q |
132 |
gccacaagtgaggcgtaaggattgaatggattgtggtgatgaggtgaagaaattggaaaacctgtggaagtcggaaaagtagttgtcatcaaggtcgaag |
231 |
Q |
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| T |
2018645 |
gccacaagtgaggcgtaaggattgaatggattgtggtgatgaggtgacgaaattggaaaacctgtggaagtcggaaaagtagttgtcatcaaggtcgaag |
2018546 |
T |
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| Q |
232 |
gaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcggaaggaacgacagaatgtga |
321 |
Q |
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| T |
2018545 |
gaacggaaggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcggaaggaacgacagaatgtga |
2018456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 226 - 321
Target Start/End: Complemental strand, 2005700 - 2005605
Alignment:
| Q |
226 |
tcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcggaaggaacgacagaatgtga |
321 |
Q |
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| T |
2005700 |
tcgaaggaacggagtgagagccaaagtggtttccatctctttgacagaaggctagtagcagacgcatctctcgtcggaaggcatgacagaatgtga |
2005605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 321
Target Start/End: Complemental strand, 2011919 - 2011779
Alignment:
| Q |
181 |
aaattggaaaacctgtggaagtcggaaaagtagttgtcatcaaggtcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggctag |
280 |
Q |
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| T |
2011919 |
aaatcggaaaacttgaggaagtcaggaaagtatctgtcatggaagtcaaaggaacggagcgagagccaaagtggtttccatctctttgatagaagacttg |
2011820 |
T |
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| Q |
281 |
tagcaacagcatccctcgtcggaaggaacgacagaatgtga |
321 |
Q |
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| T |
2011819 |
tagcagcagcatctctcgttggaaggaatgagagaatgtga |
2011779 |
T |
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