View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_85 (Length: 321)
Name: NF1114_low_85
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 12827262 - 12827473
Alignment:
| Q |
29 |
agctttaccaaccaaatcatcttcatttgcgtcttcgatatcttcctcaatttcatcttcagttgaatcaatctcatacaaatccacaccaccactacct |
128 |
Q |
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| T |
12827262 |
agctttaccaaccaaatcatcttcatttgcgtcttcaatatcttcctcaatttcatcttcagttgaatcaatctcatacaaatccacaccaccactacct |
12827361 |
T |
|
| Q |
129 |
ccggcatcctcttcatcctcatcatctataataaacctccgtccaggtttcgccgccggagcagcagccgccgcatcatcacattcagcatcatctaatt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12827362 |
ccggcatcctcttcatcctcatcatctataataaacctccgtccaggtttcgctgccggagcagcagccgccg---catcacattcagcatcatctaatt |
12827458 |
T |
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| Q |
229 |
catcaaggatattat |
243 |
Q |
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||||||||||||||| |
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| T |
12827459 |
catcaaggatattat |
12827473 |
T |
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