View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_89 (Length: 318)
Name: NF1114_low_89
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_89 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 78 - 318
Target Start/End: Original strand, 51866503 - 51866741
Alignment:
| Q |
78 |
catcatggcatattttaatatgataataataaattcaggattttgtcataaatttgtcctaaattaagacatagcagattgtgagatgagggggtggtga |
177 |
Q |
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| T |
51866503 |
catcatggcacattttaatatgataatgataaattcaggattttgtcataaatttgtcataaattaagacatagcagattgtgagatgagggggtggtga |
51866602 |
T |
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| Q |
178 |
catgcaaaccaacacaaaaataataaattcagatgaatgacaccttttgaatacaaagtatatttttggtaatgaccatgatagataataaaaagcagga |
277 |
Q |
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| T |
51866603 |
caggtaaaccaacacaataataataaattcagatg--ggacaccttttgaatacaaagtatatttttggtaatgaccatgatagataataaaaagcagga |
51866700 |
T |
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| Q |
278 |
agccagaacagttcnnnnnnnacctcaacttgatcaatttc |
318 |
Q |
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| T |
51866701 |
agccagaacagttctttttttacctcaacttgatcaatttc |
51866741 |
T |
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