View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_9 (Length: 565)
Name: NF1114_low_9
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 144 - 555
Target Start/End: Original strand, 40377514 - 40377921
Alignment:
| Q |
144 |
gttatgtgcagaaagtggtaaacgtgaagtataatttgagggcgatgttgaatcacccttctacagacgttgagagcgctaatggtccttgcgaagtgcg |
243 |
Q |
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| T |
40377514 |
gttatgtgcagaaagtggtaaacgtgaagtataatttgagggcgatgttgaatcacccttatacagacgttgagagcgctaatggtccttgcgaagtgtg |
40377613 |
T |
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| Q |
244 |
acacgatcttaagaggcagacttggacgtggagatggagtcaggatgtacttttgtgtggtgctccttcattttgttttgccttgtttgtcttggatttt |
343 |
Q |
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| T |
40377614 |
acacgatattaagaggcagacatggacgtggagatggagtcaggatgtacttttgtgtggtgctccttcattttgttttgccttgtttgtcttggatttt |
40377713 |
T |
|
| Q |
344 |
ggcgtaattgaccttactttattgggtttttaatcgatcagaaagataatttgatctttatcaataaatttgccttnnnnnnnngtatatggtcttcaat |
443 |
Q |
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| T |
40377714 |
ggcgtaattaaccttactttattgggtttttagtcgatcagaaagataatttgatctttattaataaatttgccttaaaaaaaagtatatggtcttcaat |
40377813 |
T |
|
| Q |
444 |
actccgcgtatgtacaccgatatcccaaaatataatttggtatatgaaccgagaggtcgcattctttcaatgcacaaaagttaatgaatgaatattcaga |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40377814 |
actccgcgtatgtacaccgatatcccaaaatataatttggtatatgaaccgagaggtcgcattctttcaatgcacaaaag----tgaatgaatattcaga |
40377909 |
T |
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| Q |
544 |
gattgagtatta |
555 |
Q |
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|||||||||||| |
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| T |
40377910 |
gattgagtatta |
40377921 |
T |
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