View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_91 (Length: 314)
Name: NF1114_low_91
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_91 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 303
Target Start/End: Complemental strand, 2551706 - 2551440
Alignment:
| Q |
30 |
ataaacatgttttttgttgggtttgcattgaagcttgttctttagagaaacacaaaattcaagcatttt---ttgtctttcttttctttatactcttgaa |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2551706 |
ataaacatgttttttgttgggtttgcattgaagcttgttctttagagaaacacaaaattcaagcattttaatttgtctttcttttctttatactcttgaa |
2551607 |
T |
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| Q |
127 |
aaatattctannnnnnnnnnnnnnnnnntagaatatttttcaatgtattccaaatgcaaaggcaaggtaacaaataaggaatctatttttattttcattt |
226 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2551606 |
aaatattctaatatatata----------agaatatttttcaatgtattccaaatgcaaaggcaaggtaacaaataaggaatctatttttattttcattt |
2551517 |
T |
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| Q |
227 |
acacggttacttcatatgcaagttttttgcaaataaattccatgtgtaacatgatatacattattcattgatttcat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2551516 |
acacggttacttcatatgcaagttttttgcaaataaattccatgtgtaacatgatatacattattcattgatttcat |
2551440 |
T |
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