View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_94 (Length: 311)
Name: NF1114_low_94
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_94 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 4541276 - 4541007
Alignment:
| Q |
14 |
agagaacaacaacatattttgaaactcctattctgattactagcctgcttcattattcagataatcaaatgaaagtcttggaccaacttattcaaacatt |
113 |
Q |
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| T |
4541276 |
agagaacaacaacatattttgaaactcatattctgattactagcctgcttctttattcagataatcaaatgaaagtcttggaccaacttattcaaacatt |
4541177 |
T |
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| Q |
114 |
agtctatgtaggaaacatatacattacaatctgaatcacaattacattataatctgaaaaacataaagctaattggaggaggtcaaagtttgcaacactn |
213 |
Q |
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| T |
4541176 |
agtctatgtaggaaacatatacattacaatctgaatcacaaatacattataatctgaaaaacataaagctaattggagggggtcaaagtttgcaacacta |
4541077 |
T |
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| Q |
214 |
nnnnnntcaagcattaaattgcacaaattgaaactaaccaagactataaatatagtagtcagcagaaact |
283 |
Q |
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| T |
4541076 |
aaaaaatcaagcattaaattgcacaaattgaaactaaccaagactataaatatagtagtcagcagaaact |
4541007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 24846253 - 24846192
Alignment:
| Q |
222 |
aagcattaaattgcacaaattgaaactaaccaagactataaatatagtagtcagcagaaact |
283 |
Q |
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| T |
24846253 |
aagcattaaattgcacaaattgaaactaaccaagactattaatatagtagtcagcagaaact |
24846192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 24846346 - 24846291
Alignment:
| Q |
157 |
acattataatctgaaaaacataaagctaattggaggaggtcaaagtttgcaacact |
212 |
Q |
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| T |
24846346 |
acattataatatgaaaaacataaagctaattggagggggtcaaagtttgcaacact |
24846291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 24846461 - 24846367
Alignment:
| Q |
66 |
ttattcagataatcaaatgaaagtcttggaccaac-ttattcaaacattagtctatgtaggaaacatatacattacaatctgaatcacaattaca |
159 |
Q |
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|||||| |||||| ||||||| || |||||| || ||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||| |
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| T |
24846461 |
ttattcggataatgaaatgaagttcatggacctacattattcaaacattagtctaggtatgaaacatacacattataatctgaatcacaattaca |
24846367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 281
Target Start/End: Original strand, 8354157 - 8354281
Alignment:
| Q |
157 |
acattataatctgaaaaacataaagctaattggaggaggtcaaagtttgcaacactnnnnnnntcaagcattaaattgcacaaattgaaactaaccaaga |
256 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||| |
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| T |
8354157 |
acattataatatgaaaaacataaagctaattggagggggtcaaagtttgcaacactaaaaaaataaagcattaaattgcacaaactgaaactaatcaaga |
8354256 |
T |
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| Q |
257 |
ctataaatatagtagtcagcagaaa |
281 |
Q |
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|||| |||||||||||||||||||| |
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| T |
8354257 |
ctattaatatagtagtcagcagaaa |
8354281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 8354042 - 8354136
Alignment:
| Q |
66 |
ttattcagataatcaaatgaaagtcttggaccaac-ttattcaaacattagtctatgtaggaaacatatacattacaatctgaatcacaattaca |
159 |
Q |
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|||||| |||||||||||||| |||||||||| || ||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||| |
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| T |
8354042 |
ttattcggataatcaaatgaaggtcttggacctacattattcaaacattagtctaggtatgaaacatacacattataatctgaatcacaattaca |
8354136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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