View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1114_low_97 (Length: 305)
Name: NF1114_low_97
Description: NF1114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1114_low_97 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 64 - 298
Target Start/End: Complemental strand, 27225416 - 27225178
Alignment:
| Q |
64 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatcccttggttttgacctcctgattcttactacctaagcaa |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
27225416 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatcccttggttttgaccccctaattcttactacctaagcaa |
27225317 |
T |
|
| Q |
164 |
ttgcttgaggttcaagaaagggaaagtttgatagacttatattttaaataattttatggttatattttatttaa----taagttagtacttctatttact |
259 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27225316 |
ttgcttaaggttcaagaaagggaaagtttgatagacttatattttaaataattttatggttatattttatttaataattaagttagtacttctatttact |
27225217 |
T |
|
| Q |
260 |
gaatagtggagtttgtgcattactgagagatattcttcg |
298 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||| |
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| T |
27225216 |
gaataggggagtttgtgcattactgagagatatttttcg |
27225178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 27225620 - 27225591
Alignment:
| Q |
33 |
agaagagggaatcgttcatggctttgctcc |
62 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
27225620 |
agaagagggaatcgttcatggctttgctcc |
27225591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 64 - 298
Target Start/End: Complemental strand, 259544 - 259306
Alignment:
| Q |
64 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatcccttggttttgacctcctgattcttactacctaagcaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
259544 |
attgatgaaactttgtaacctagaggagcttaagactctaagttggaatgaaattggtgatcccttggttttgaccccctaattcttactacctaagcaa |
259445 |
T |
|
| Q |
164 |
ttgcttgaggttcaagaaagggaaagtttgatagacttatattttaaataattttatggttatattttatttaa----taagttagtacttctatttact |
259 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
259444 |
ttgcttaaggttcaagaaagggaaagtttgatagacttatattttaaataattttatggttatattttatttaataattaagttagtacttctatttact |
259345 |
T |
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| Q |
260 |
gaatagtggagtttgtgcattactgagagatattcttcg |
298 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||| |
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| T |
259344 |
gaataggggagtttgtgcattactgagagatatttttcg |
259306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 259748 - 259719
Alignment:
| Q |
33 |
agaagagggaatcgttcatggctttgctcc |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
259748 |
agaagagggaatcgttcatggctttgctcc |
259719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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