View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11150_high_11 (Length: 381)
Name: NF11150_high_11
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_high_11 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] scaffold0006 (1 HSPs) |
| |
|
| [»] scaffold0182 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 26397198 - 26397562
Alignment:
| Q |
17 |
aaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26397198 |
aaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgttgggtatttg |
26397297 |
T |
|
| Q |
117 |
gaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgttttcatcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26397298 |
gaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccacccattgccttaagccatgttttcatcaa |
26397397 |
T |
|
| Q |
217 |
ccattcgaaactctcagaggtctcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggcatt |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397398 |
ccatttgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggcatt |
26397497 |
T |
|
| Q |
317 |
ttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26397498 |
ttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacactttataatcatc |
26397562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 44 - 381
Target Start/End: Original strand, 25829782 - 25830119
Alignment:
| Q |
44 |
cttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttggaaatacctcttcaatagccactttca |
143 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| |||||||||||||||||||| || ||||| || |||||||| |||| ||| |||||||||| |
|
|
| T |
25829782 |
cttattacatgaccaagcttctcatgaacctttcttagtatatgccaaagacaaaatcggtgtcgagtgtttggaaacacctaactaatcgccactttca |
25829881 |
T |
|
| Q |
144 |
ttgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtctcatt |
243 |
Q |
| |
|
||||||| ||||| | |||||| |||||| ||||||||||||| | |||||| | |||| ||||||||||||||| |||| | | || ||||||| |
|
|
| T |
25829882 |
ttgctctatcttgataagttattattgcagttggaggtttcccgcccattgctctgagccttgttttcatcaaccaagtgaaattatttgacgtctcatc |
25829981 |
T |
|
| Q |
244 |
tgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgtgatatatgtagta |
343 |
Q |
| |
|
| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||| | |||| || || |||||||||||||| ||| |
|
|
| T |
25829982 |
tataagtaaagcgcaaccaagtaaccttgactgaaagtgattattcacaccaataaaaggagcaaatgacgttttgtacttatttgtgatatatgttgta |
25830081 |
T |
|
| Q |
344 |
tcaaaggaaattacatctccaaacactttataatcatc |
381 |
Q |
| |
|
| || ||||| ||||||||||| ||||||||||||| |
|
|
| T |
25830082 |
ccgaatgaaatcacatctccaaattctttataatcatc |
25830119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 200 - 381
Target Start/End: Complemental strand, 26460329 - 26460148
Alignment:
| Q |
200 |
agccatgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatga |
299 |
Q |
| |
|
||||| |||||||||| |||| |||| |||| ||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
26460329 |
agccaagttttcatcacccatgtgaaagtctccgaggtctcatttgctagtaatgcacaaccaagcaatcttgattgaaagtgattattcacaccaatga |
26460230 |
T |
|
| Q |
300 |
atggagcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatc |
381 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||| |||||||| || || |||||||||||| |||| |||||||| |
|
|
| T |
26460229 |
agggagcaaatgacattttatatttgtttgtgatatatgttgtatcaaaagatatcacatctccaaactctttgtaatcatc |
26460148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 39 - 330
Target Start/End: Original strand, 19219724 - 19220015
Alignment:
| Q |
39 |
tatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttggaaatacctcttcaatagccac |
138 |
Q |
| |
|
||||||||| |||||||| || ||||||| | || |||||||||||||||||||||||||| | ||| | || |||||||||| |||| |||| ||| |
|
|
| T |
19219724 |
tatttcttaatacatgacaaaacttctcaagaacatttctaagtatatgccaaagacaaaatcagtgttgagtgtttggaaatatctctctgatagtcac |
19219823 |
T |
|
| Q |
139 |
tttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgttttcatcaaccattcgaaactctcagaggtc |
238 |
Q |
| |
|
||| |||||||| ||||| ||| ||| |||||| |||||||||| | | | | || |||||||||||||||| |||| || | | | |||||| |
|
|
| T |
19219824 |
ttttattgctctatcttgatcacatattattgcaattggaggttttacgcccgacgttttgagccatgttttcatcatccatatgagagtatttgaggtc |
19219923 |
T |
|
| Q |
239 |
tcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggcattttatatttgtttgt |
330 |
Q |
| |
|
| || | ||||||||| | |||| ||||| ||||||||||||| ||||||||||||||| || |||| | ||| ||||||||| || ||||| |
|
|
| T |
19219924 |
taatctactagtaatgtgtaaccaagtaaccttgactgaaagttattattcacaccaataaaaggagaacatgacattttatacttatttgt |
19220015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 19217538 - 19217623
Alignment:
| Q |
41 |
tttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttggaaatacctc |
126 |
Q |
| |
|
||||||| |||||||| || ||||||| | || ||||||||||||| ||||||| |||| | |||||| || |||||||||||||| |
|
|
| T |
19217538 |
tttcttaatacatgactaaacttctcaagaacatttctaagtatataccaaagataaaatcaatgtcgagtgtttggaaatacctc |
19217623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 276593 - 276957
Alignment:
| Q |
17 |
aaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
276593 |
aaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgttgggtatttg |
276692 |
T |
|
| Q |
117 |
gaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgttttcatcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
276693 |
gaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccacccattgccttaagccatgttttcatcaa |
276792 |
T |
|
| Q |
217 |
ccattcgaaactctcagaggtctcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggcatt |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
276793 |
ccatttgaaactctcagaggtctcatttgctagtaatgcacaaccgagtaatcttgactgaaagtgattattcacaccaatgaatgtagcaaatggcatt |
276892 |
T |
|
| Q |
317 |
ttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
276893 |
ttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacactttataatcatc |
276957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 29483 - 29847
Alignment:
| Q |
17 |
aaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29483 |
aaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttg |
29582 |
T |
|
| Q |
117 |
gaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgttttcatcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29583 |
gaaatacctcttcaatagccactttcattgctctgtcttggtaagttatcattggatttggaggtttcccacatattgccttaagccatgttttcatcaa |
29682 |
T |
|
| Q |
217 |
ccattcgaaactctcagaggtctcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggcatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29683 |
ccattcgaaactctcagaggtctcatttgctagtaatgcacaaccgattaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggtatt |
29782 |
T |
|
| Q |
317 |
ttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatc |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29783 |
ttatatttgtttgtgatatatgtagtatcaaaggaaatcacatctccaaacactttataatcatc |
29847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 20645933 - 20646305
Alignment:
| Q |
17 |
aaatatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttg |
116 |
Q |
| |
|
||||||||||||||||| ||||| | ||||| |||||||| || || |||||||| ||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
20645933 |
aaatatcccatgaaatcatcattttcacttataacatgaccgagtttttcaggcacttttctaagtatatgccaaagacaaaaacgatgtcgagcatttg |
20646032 |
T |
|
| Q |
117 |
gaaatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgttttcatcaa |
216 |
Q |
| |
|
||| ||| | | ||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| | ||||||| ||||||| ||| |
|
|
| T |
20646033 |
gaa-tacatttgcaataactactttcattgctctgtcttggtcagttattattgcatttggaggcttcccacccattgtcctaagccaagttttcaccaa |
20646131 |
T |
|
| Q |
217 |
ccattcgaaactctcagaggtctcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatg---------aatggagca |
307 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||||||| | ||| || |||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20646132 |
ccatgtgaaagtctctgaggtctcatttgctagtaatgcaccaccaagcaatcttgattgaaagtgattattcacaccaatgaagggagcaaatggagca |
20646231 |
T |
|
| Q |
308 |
aatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatc |
381 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||| || || |||||||||||| |||| |||||||| |
|
|
| T |
20646232 |
aatggcattttatatttgtctgtgatatatgttgtatcaaaagatatcacatctccaaactctttgtaatcatc |
20646305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 56108845 - 56108497
Alignment:
| Q |
19 |
atatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttgga |
118 |
Q |
| |
|
||||| |||||| ||||| | || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
56108845 |
atatctcatgaagtcttcgtcatctcttaaaacatgactaagcttctcaggcacctttctaagtatatgccaaagacaaaatcgatgtcgagaatttgga |
56108746 |
T |
|
| Q |
119 |
aatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgttttcatcaacc |
218 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||| |||||||| |||||||||||| |
|
|
| T |
56108745 |
aatacctctttaatagcctctttcattgctctatcttgatcagttatgattgcatttggaggttttccacccattgctctaagccatattttcatcaacc |
56108646 |
T |
|
| Q |
219 |
attcgaaactctcagaggtctcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggcatttt |
318 |
Q |
| |
|
|| |||| | | |||||||| || |||||||| || || ||||| ||||| ||||||||||| || |||||||| || ||||||||||||||||| |
|
|
| T |
56108645 |
atatgaaagtgttcttggtctcatctgagagtaatgcacagccaagtaaccttgattgaaagtgattgtttacaccaataaaaggagcaaatggcatttt |
56108546 |
T |
|
| Q |
319 |
atatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaac |
367 |
Q |
| |
|
|| || ||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
56108545 |
gtacttatttgtgatatatgtagtatcaaatgaaatcacatctccaaac |
56108497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 26014612 - 26014264
Alignment:
| Q |
19 |
atatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttgga |
118 |
Q |
| |
|
||||| |||||| ||||| | || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
26014612 |
atatctcatgaagtcttcgtcatctcttaaaacatgactaagcttctcaggcacctttctaagtatatgccaaagacaaaatcgatgtcgagaatttgga |
26014513 |
T |
|
| Q |
119 |
aatacctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgttttcatcaacc |
218 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||| |||||||| |||||||||||| |
|
|
| T |
26014512 |
aatacctctttaatagcctatttcattgctctatcttgatcagttatgattgcatttggaggttttccacccattgctctaagccatattttcatcaacc |
26014413 |
T |
|
| Q |
219 |
attcgaaactctcagaggtctcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggcatttt |
318 |
Q |
| |
|
|| |||| | | ||||||| || |||||||| || || ||||| ||||| ||||||||||| || |||||||| || ||||||||||||||||| |
|
|
| T |
26014412 |
atatgaaagtgttcttagtctcatctgagagtaatgcacagccaagtaaccttgattgaaagtgattgtttacaccaataaaaggagcaaatggcatttt |
26014313 |
T |
|
| Q |
319 |
atatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaac |
367 |
Q |
| |
|
|| || ||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
26014312 |
gtacttatttgtgatatatgtagtatcaaatgaaatcacatctccaaac |
26014264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 6966120 - 6965769
Alignment:
| Q |
19 |
atatcccatgaaatcttcattatttcttattacatgaccaagcttctcaggcacctttctaagtatatgccaaagacaaaaacgatgtcgggtatttgga |
118 |
Q |
| |
|
||||| |||||| ||||| | || ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
6966120 |
atatctcatgaagtcttcgtcatctcttaaaacatgactaagcttctcaggcacctctctaagtatatgccaaagacaaaatcgatgtcaagaatttgga |
6966021 |
T |
|
| Q |
119 |
aatac---ctcttcaatagccactttcattgctctgtcttggtcagttatcattgcatttggaggtttcccactcattgccttaagccatgttttcatca |
215 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||| |||||||| ||||||||| |
|
|
| T |
6966020 |
aatactacctctttaatagcctctttcattgctctatcttgatcagttatgattgcatttggaggttttccacccattgctctaagccatattttcatca |
6965921 |
T |
|
| Q |
216 |
accattcgaaactctcagaggtctcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatgaatggagcaaatggcat |
315 |
Q |
| |
|
||||| |||| | | |||||||| || |||||||| || || ||||| ||||| ||||||||||| || |||||||| || |||||||||| ||| |
|
|
| T |
6965920 |
accatatgaaaatgttcttggtctcatctgagagtaatgcacagccaagtaaccttgattgaaagtgattgtttacaccaataaaaggagcaaatgacat |
6965821 |
T |
|
| Q |
316 |
tttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaac |
367 |
Q |
| |
|
||| || || |||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
6965820 |
tttgtacttatttgtggtatatgtagtatcaaatgaaatcacatctccaaac |
6965769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 204 - 381
Target Start/End: Complemental strand, 33002646 - 33002469
Alignment:
| Q |
204 |
atgttttcatcaaccattcgaaactctcagaggtctcatttgctagtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaatgaatgg |
303 |
Q |
| |
|
|||||||||||||||| |||| | || |||||||||| | ||||||| |||||||| | ||| ||||||||||||||||||||||||||||| || || |
|
|
| T |
33002646 |
atgttttcatcaaccaagtgaaagtatccgaggtctcatctactagtaaagcgcaaccaaataaccttgactgaaagtgattattcacaccaataaaagg |
33002547 |
T |
|
| Q |
304 |
agcaaatggcattttatatttgtttgtgatatatgtagtatcaaaggaaattacatctccaaacactttataatcatc |
381 |
Q |
| |
|
||||||||||||||| || || |||||||||||||| ||||| || ||||| ||||||||||| ||| ||||||||| |
|
|
| T |
33002546 |
agcaaatggcattttgtacttatttgtgatatatgttgtatcgaatgaaatcacatctccaaattcttgataatcatc |
33002469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 30400453 - 30400404
Alignment:
| Q |
248 |
agtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaat |
297 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
30400453 |
agtaatgcgcaaccaagtaaccttgaccgaaagtgattattctcaccaat |
30400404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 30407010 - 30406961
Alignment:
| Q |
248 |
agtaatgcgcaaccgagtaatcttgactgaaagtgattattcacaccaat |
297 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
30407010 |
agtaatgcgcaaccaagtaaccttgaccgaaagtgattattctcaccaat |
30406961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University