View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_high_12 (Length: 375)
Name: NF11150_high_12
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 47506897 - 47506572
Alignment:
| Q |
17 |
cacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatgaat |
116 |
Q |
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| T |
47506897 |
cacagacaccagcaaggttatgttaataatggtggatactcacttcatccatgtgagcacactgccccgtgggtttcgggagtgacaaatttgaatgaat |
47506798 |
T |
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| Q |
117 |
agcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaactctcttattataccataagatcgatgattgaattgaaacagaca |
216 |
Q |
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| T |
47506797 |
agcagcaagagaagagaaagggacagtcaaagcattgggatttgtgaatatcaaa--ctcttattataccataa----gatgattgaattgaaacagaca |
47506704 |
T |
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| Q |
217 |
cacttttaatttgttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttataagtat |
316 |
Q |
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| T |
47506703 |
cacttttaatttgttgaaataagtggtatgggagttagtggttgtggggtatataaactcgttattataagtgtgtcagaaagaaattttttataa---- |
47506608 |
T |
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| Q |
317 |
gtataatgcacacccaccacaaaacaatcatgttca |
352 |
Q |
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| T |
47506607 |
gtataatgcatacccaccacaaaacaatcatgttca |
47506572 |
T |
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