View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_high_13 (Length: 358)
Name: NF11150_high_13
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 342
Target Start/End: Complemental strand, 43769609 - 43769271
Alignment:
| Q |
11 |
cacagattgaataccagtaatgtccgcaggtgcatataccaccattgactcgtaagaatttgtgcagctatcttgcagtatccacatattgttttcttta |
110 |
Q |
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| T |
43769609 |
cacagattgaataccagtaatatccgcaggtgcatataccaccattgactcgtaagaatttgtgcagctatcttgcagtatccacatattgttttctttt |
43769510 |
T |
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| Q |
111 |
gatttaattgtctataaagggagaagnnnnnnncttcttatttttcttagaagttagaaaatgtttcaaatgtaacttgcattttgttcagtatgttaag |
210 |
Q |
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| T |
43769509 |
gatttaattgtctataaagggagaagaaaaaaacctcttatttttcttggaagttagaaaatgtttcaaatgtaacttgcattttgttcagtatgttaag |
43769410 |
T |
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| Q |
211 |
ttttgaata-------acttacttggatagttactgcattgcctctgtcttgtcctttggctaaatttgcaatggattgcactgtcccaccattagacat |
303 |
Q |
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| T |
43769409 |
ttttgaatattgagtaacttacttggatagttactgcattgcctctgtcttgtcctttggctaaatttgcaatggattgcactgtcccaccattagacat |
43769310 |
T |
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| Q |
304 |
tatatcccactgtcataatgattattgtcaacacaaaaa |
342 |
Q |
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| T |
43769309 |
tatatcccactgtcataatgattattgtcaacacaaaaa |
43769271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 43779774 - 43779703
Alignment:
| Q |
148 |
ttatttttcttagaagttagaaaatgtttcaaatgtaacttgcattttgttcagtatgttaagttttgaata |
219 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
43779774 |
ttatttttcttagaagttagaaaatgttttaaatgtaacttgcattttgttcaatatgttcagttttgaata |
43779703 |
T |
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