View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11150_high_19 (Length: 294)
Name: NF11150_high_19
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 41992772 - 41993040
Alignment:
| Q |
13 |
agcaaagggctaggctatacataataagaaggtgtgtggtcatgcttctatgttggcatgagtaattgaaagtacacatgtgtttggtaaacactaaaa- |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41992772 |
agcaaagggctaggctatacataataagaaggtgtgtggtcatgcttctatgttggcatgagtaattgaaagtacacatgtgtttggtaaacactaaaaa |
41992871 |
T |
|
| Q |
112 |
tcgcggcgaaaaatcacagtggatcagaagctacacattggaacttctaaaattcgcattgagagagctttgaactcgtggtagcagtgtccaccgttca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41992872 |
tcgcggcgaaaaatcacagtggatcagaagctacacattggaacttctaaaattcgcattgagagtgctttgaactcgtggtagcagtgtccaccgttca |
41992971 |
T |
|
| Q |
212 |
accaaacacatgctaagtagttagttaagttgagatctttttaagacttagaagttccaagcttggttc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41992972 |
accaaacacatgctaagtagttagttaagttgagatctttttaagacttagaagttccaagcttggttc |
41993040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 22021017 - 22020954
Alignment:
| Q |
13 |
agcaaagggctaggctatacataataagaaggtgtgtggtcatgcttctatgttggcatgagta |
76 |
Q |
| |
|
|||||||||| |||||||||||||| || || |||||| ||||||| || |||||||||||||| |
|
|
| T |
22021017 |
agcaaagggcaaggctatacataattaggagatgtgtgatcatgctcctttgttggcatgagta |
22020954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University