View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11150_high_2 (Length: 579)

Name: NF11150_high_2
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11150_high_2
NF11150_high_2
[»] chr5 (5 HSPs)
chr5 (10-132)||(39040708-39040834)
chr5 (449-568)||(39040088-39040206)
chr5 (127-210)||(39040456-39040539)
chr5 (306-390)||(39040265-39040349)
chr5 (269-313)||(39040355-39040399)
[»] chr4 (2 HSPs)
chr4 (269-388)||(23126895-23127016)
chr4 (449-568)||(23127076-23127195)
[»] chr1 (3 HSPs)
chr1 (306-388)||(47926246-47926328)
chr1 (518-568)||(47926459-47926509)
chr1 (269-303)||(47926196-47926230)
[»] chr2 (3 HSPs)
chr2 (449-568)||(2021774-2021894)
chr2 (269-313)||(2022042-2022086)
chr2 (306-388)||(2021954-2022034)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 9e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 39040834 - 39040708
Alignment:
Q  10 gcagagagccttatataatatgagttgcagttgcacaacataatttctcggttctattggatcatgcaaacaaacgtcttattgaattatggtttgcaaa 109  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39040834 gcagagagccttatataatatgaggtgcagttgcacaacataatttctcggttctattggatcatgcaaacaaacgtcttattgaattatggtttgcaaa 39040735  T
Q  110 act----gatggatttagatgataatg 132  Q
    |||    ||||||||||||||||||||    
T  39040734 actgatcgatggatttagatgataatg 39040708  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 449 - 568
Target Start/End: Complemental strand, 39040206 - 39040088
Alignment:
Q  449 gaagttatctagtgaagtagctatgctttcaannnnnnnnngtcatggaaatgaaagattcaattgatgcaagcaacacgttgtgtctttttgataagaa 548  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  39040206 gaagttatctagtgaagtagctatgctttcaatttttttt-gtcatggaaatgaaagattcagttgacgcaagcaacacgttgtgtctttttgataagaa 39040108  T
Q  549 agaaaacaatatacttactt 568  Q
    ||||||||||||||||||||    
T  39040107 agaaaacaatatacttactt 39040088  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 39040539 - 39040456
Alignment:
Q  127 ataatgagtggatcaaaataataatcatgtgacacttgaggaaccactaaagcattaatgtatctaaacctaaaaacccggtga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  39040539 ataatgagtggatcaaaataataatcatgtgacacttgaggaaccactaaagcattaatgtatctaaacctaataatccggtga 39040456  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 306 - 390
Target Start/End: Complemental strand, 39040349 - 39040265
Alignment:
Q  306 aggagagataaaaaatcacattttagctttctatgctttgcagcgaagaaagagaggacaaagcttgctaattgcaacaaatata 390  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39040349 aggagagataaaaaatcaccttttagctttctcagctttgcagcgaagaaagggaggacaaagcttgctaattgcaacaaatata 39040265  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 39040399 - 39040355
Alignment:
Q  269 tagtgtttttcttttgtttggtggaggagagaagtcaaggagaga 313  Q
    |||||||||||||||||||| | ||||||||||||||||||||||    
T  39040399 tagtgtttttcttttgtttgatagaggagagaagtcaaggagaga 39040355  T

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Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 269 - 388
Target Start/End: Original strand, 23126895 - 23127016
Alignment:
Q  269 tagtgtttttcttttgtttggtggaggagagaagtcaaggagagat--aaaaaatcacattttagctttctatgctttgcagcgaagaaagagaggacaa 366  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| || |||| ||||||| |||||||||| |||||||  ||||||||    
T  23126895 tagtgtttttcttttgtttggtggaggagagaagttaaggagagataaaaaaaattacctttttgctttctctgctttgcagtgaagaaattgaggacaa 23126994  T
Q  367 agcttgctaattgcaacaaata 388  Q
    |||||| |||||||| ||||||    
T  23126995 agcttgttaattgcagcaaata 23127016  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 449 - 568
Target Start/End: Original strand, 23127076 - 23127195
Alignment:
Q  449 gaagttatctagtgaagtagctatgctttcaannnnnnnnngtcatggaaatgaaagattcaattgatgcaagcaacacgttgtgtctttttgataagaa 548  Q
    ||||||||||||||||||||||||||||||||         ||||||||||||||||||| | |||| ||||||| ||| |||||| ||||| |||||||    
T  23127076 gaagttatctagtgaagtagctatgctttcaatttttttttgtcatggaaatgaaagattgagttgacgcaagcagcacattgtgtttttttaataagaa 23127175  T
Q  549 agaaaacaatatacttactt 568  Q
    ||||||||||||||||||||    
T  23127176 agaaaacaatatacttactt 23127195  T

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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 47926246 - 47926328
Alignment:
Q  306 aggagagataaaaaatcacattttagctttctatgctttgcagcgaagaaagagaggacaaagcttgctaattgcaacaaata 388  Q
    |||||||||||||||||||||||| ||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  47926246 aggagagataaaaaatcacatttttgctttctctgttttgcagccaagaaagggaggacaaagcttgctaattgcaacaaata 47926328  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 518 - 568
Target Start/End: Original strand, 47926459 - 47926509
Alignment:
Q  518 caagcaacacgttgtgtctttttgataagaaagaaaacaatatacttactt 568  Q
    |||||| |||||||||| ||||  |||||||||||||||||||||||||||    
T  47926459 caagcaccacgttgtgttttttatataagaaagaaaacaatatacttactt 47926509  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 47926196 - 47926230
Alignment:
Q  269 tagtgtttttcttttgtttggtggaggagagaagt 303  Q
    ||||||||||| |||||||||||||||||||||||    
T  47926196 tagtgtttttcatttgtttggtggaggagagaagt 47926230  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 568
Target Start/End: Complemental strand, 2021894 - 2021774
Alignment:
Q  449 gaagttatctagtgaagtagctatgctttcaannnnnnnnn-gtcatggaaatgaaagattcaattgatgcaagcaacacgttgtgtctttttgataaga 547  Q
    ||||||||||||||||||||||||||||||||          ||||||||||| ||||||| | |||| ||||||| |||||||||| ||||||||||||    
T  2021894 gaagttatctagtgaagtagctatgctttcaattttttttttgtcatggaaataaaagattgagttgacgcaagcagcacgttgtgtttttttgataaga 2021795  T
Q  548 aagaaaacaatatacttactt 568  Q
    |||||||||||||||||||||    
T  2021794 aagaaaacaatatacttactt 2021774  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 2022086 - 2022042
Alignment:
Q  269 tagtgtttttcttttgtttggtggaggagagaagtcaaggagaga 313  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  2022086 tagtgtttttcttttgtttggtggaggagagaagttaaggagaga 2022042  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 2022034 - 2021954
Alignment:
Q  306 aggagagataaaaaatcacattttagctttctatgctttgcagcgaagaaagagaggacaaagcttgctaattgcaacaaata 388  Q
    ||||||||||||||| ||| |||| |||||||   ||||  || |||||||| ||||||||||||||||||||||||||||||    
T  2022034 aggagagataaaaaaccacctttttgctttctc--ctttctagtgaagaaagggaggacaaagcttgctaattgcaacaaata 2021954  T

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