View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11150_high_23 (Length: 275)
Name: NF11150_high_23
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_high_23 |
 | |
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| [»] scaffold0182 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 30091 - 29831
Alignment:
| Q |
15 |
aagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
30091 |
aagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgttgt |
29992 |
T |
|
| Q |
115 |
ttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29991 |
ttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatg |
29892 |
T |
|
| Q |
215 |
atggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtt |
275 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29891 |
atggtcatgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtt |
29831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 26397806 - 26397546
Alignment:
| Q |
15 |
aagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26397806 |
aagcaaaatctttgccacaatggccaaacaacacggaagatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
26397707 |
T |
|
| Q |
115 |
ttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26397706 |
ttgaatttagaatcaggagatgcaaaggcaatgctgtagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatg |
26397607 |
T |
|
| Q |
215 |
atggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26397606 |
atggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtt |
26397546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 26459901 - 26460160
Alignment:
| Q |
15 |
aagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
114 |
Q |
| |
|
||||||| | ||||||||| | || |||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||| |
|
|
| T |
26459901 |
aagcaaattttttgccacacttgcgaaacaacacggagggtatgagaaagttggttgcttggagaaagatattaaaaatcttttagataaggatcgtcgt |
26460000 |
T |
|
| Q |
115 |
ttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttg---gatg |
211 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| |||| | || || || ||||||| || ||||| |||||||||||||||| | |||||| |||| |
|
|
| T |
26460001 |
ttgactttggaatcaggagatgcaaatgcaatgttggaatgttgtacgcttatgcaaaaacaaaatccaagattcttttatgcgatggatttggatgatg |
26460100 |
T |
|
| Q |
212 |
atgatggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaag |
271 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||| ||| |||| ||||||||| |||| |
|
|
| T |
26460101 |
atgatggtcgtctgaaaaatgtattttggatggatgcaaatggtatagatgattacaaag |
26460160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 28 - 271
Target Start/End: Complemental strand, 25830350 - 25830107
Alignment:
| Q |
28 |
gccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgtttgaatttagaat |
127 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || || | |||||||||||||| |||||||| |||||||||| ||||||||| ||||| | |
|
|
| T |
25830350 |
gccacaatggccaaacaacatggagggtatgaaaacattagctgcttggagaaagacattagaaatcatttagataaaagtcgtcgtttggcattagagt |
25830251 |
T |
|
| Q |
128 |
caggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggtcgtgtaaa |
227 |
Q |
| |
|
| ||||| |||| ||||| |||||| |||||||| |||||||||||||||| | ||||| ||||||||| |||||||||||||||| | |||||||| |
|
|
| T |
25830250 |
cgggagaagcaacaacaatgttggagtgttttatgcttatgcaagaagaaaatcctagatttttttatgcaattgatttggatgatgaagatcgtgtaag |
25830151 |
T |
|
| Q |
228 |
aaatgtattttgggtggatggaaagggtagagatgattataaag |
271 |
Q |
| |
|
|||||| |||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
25830150 |
aaatgtgttttggatggatgcaaaaggtagagatgattataaag |
25830107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 277201 - 276941
Alignment:
| Q |
15 |
aagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277201 |
aagcaaaatctttgccacaatggccaaacaacacggaagatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
277102 |
T |
|
| Q |
115 |
ttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277101 |
ttgaatttagaatcaggagatgcaaaggcaatgctgaagtattttatacgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatg |
277002 |
T |
|
| Q |
215 |
atggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtt |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277001 |
atggtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattataaagtgtt |
276941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 40 - 271
Target Start/End: Complemental strand, 20646524 - 20646293
Alignment:
| Q |
40 |
aaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgtttgaatttagaatcaggagatgcaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
20646524 |
aaacaacacggaggatatgagaaagttggttgctcggagaaagatattagaaatcttttagataaggatcatcgtttgactttggaatcaggagatgcaa |
20646425 |
T |
|
| Q |
140 |
atgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggtcgtgtaaaaaatgtattttg |
239 |
Q |
| |
|
|||||||| |||||| ||||| || |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
20646424 |
atgcaatgttggagtgttttacgcttatgcaagaaaaaaattcaagattcttttatgcgatggatttggatgatgatggtcgtctgaaaaatgtattttg |
20646325 |
T |
|
| Q |
240 |
ggtggatggaaagggtagagatgattataaag |
271 |
Q |
| |
|
|||||||| ||| |||| ||||||||| |||| |
|
|
| T |
20646324 |
ggtggatgcaaatggtatagatgattacaaag |
20646293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 56108239 - 56108484
Alignment:
| Q |
15 |
aagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||| || | ||||||||||| || |||||||||||||||||||||| ||||| |||||||||| | || ||| |
|
|
| T |
56108239 |
aagcaaaatttttgccacaatggccaaagaatatggaggatatgaaaacattggttgcttggagaaagatgtaagaaaccatttagataaaggtcggcgt |
56108338 |
T |
|
| Q |
115 |
ttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatg |
214 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| | || | |||||||| ||||||||||||| | || |||||||||||||| ||||| ||||||||| |
|
|
| T |
56108339 |
ttggctttagaatctggagatgcaaatgcaatgttagattgttttatgctcatgcaagaagaaagtccaggattcttttatgcaattgatatggatgatg |
56108438 |
T |
|
| Q |
215 |
atggtcgtgtaaaaaatgtattttgggtggatggaaagggtagaga |
260 |
Q |
| |
|
| ||||| | |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
56108439 |
agggtcgcatgaaaaatgtattttgggtggatgcaaaaggtagaga |
56108484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 26014006 - 26014251
Alignment:
| Q |
15 |
aagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
114 |
Q |
| |
|
||||||| | |||||||||||||||||| || | ||||||||||| || |||||||||||||||||||||| ||||| |||||||||| | || ||| |
|
|
| T |
26014006 |
aagcaaattttttgccacaatggccaaagaatatggaggatatgaaaacattggttgcttggagaaagatgtaagaaaccatttagataaaggtcggcgt |
26014105 |
T |
|
| Q |
115 |
ttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatg |
214 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| |||| | |||||||| ||||||||||||| | || |||||||||||||| ||||| ||||||||| |
|
|
| T |
26014106 |
ttggctttagaatctggagatgcaaatgcaatgttggattgttttatgctcatgcaagaagaaagtccaggattcttttatgcaattgatatggatgatg |
26014205 |
T |
|
| Q |
215 |
atggtcgtgtaaaaaatgtattttgggtggatggaaagggtagaga |
260 |
Q |
| |
|
| ||||| | |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
26014206 |
agggtcgcatgaaaaatgtattttgggtggatgcaaaaggtagaga |
26014251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 6965511 - 6965737
Alignment:
| Q |
15 |
aagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
114 |
Q |
| |
|
||||||| | |||||||||||||||||| || | ||||||||||| | | |||||||||||||||||||||| ||||| |||||||||| | || ||| |
|
|
| T |
6965511 |
aagcaaattttttgccacaatggccaaagaatatggaggatatgaaaca-ttggttgcttggagaaagatgtaagaaaccatttagataaaggtcggcgt |
6965609 |
T |
|
| Q |
115 |
ttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatg |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||| || |||||||||||||| ||||| ||||||||| |
|
|
| T |
6965610 |
ttggctttagaatcaggagatgcaaatgcaatgttggattgttttatgctcatgcaagaagaaaatccaggattcttttatgcaattgatatggatgatg |
6965709 |
T |
|
| Q |
215 |
atggtcgtgtaaaaaatgtattttgggt |
242 |
Q |
| |
|
| ||||| | ||||||||||||||||| |
|
|
| T |
6965710 |
agggtcgcatgaaaaatgtattttgggt |
6965737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 845709 - 845527
Alignment:
| Q |
15 |
aagcaaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgt |
114 |
Q |
| |
|
||||||||| ||||||||| | || |||||||||||||| ||||||||||||||||||| ||| |||||| ||| |||| |||||||||||| |||||| |
|
|
| T |
845709 |
aagcaaaatttttgccacacttgcgaaacaacacggagggtatgagaaagttggttgctcggaaaaagatattataaatcttttagataaggatcgtcgt |
845610 |
T |
|
| Q |
115 |
ttgaatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgc |
197 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||||| ||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
845609 |
ttgactttgaaatcaggagatgcaaatgcaatgttggagtgttttacgcttatgcaagaacaaaattcaagattcttttatgc |
845527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 263
Target Start/End: Original strand, 30400105 - 30400331
Alignment:
| Q |
38 |
ccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgtttgaattt--agaatcaggagat |
135 |
Q |
| |
|
|||||||||| ||| ||||||| || ||||||||||||||||||| |||||||| |||||||||| |||| |||| ||| ||| || ||||| |
|
|
| T |
30400105 |
ccaaacaacatggatgatatgaaaacattggttgcttggagaaagacattagaaatcatttagataaaagtcgtcatttggctttttagagtcgggagac |
30400204 |
T |
|
| Q |
136 |
gcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggtcgtgtaaaaaatgtat |
235 |
Q |
| |
|
|||| ||||||| |||||| ||| |||| |||||||||| ||||| ||||| |||| || ||||||| |||||||| | |||||||| |||||||| |
|
|
| T |
30400205 |
gcaactgcaatgttggagtgttt-atgcttatgcaagaataaaatcttagatttttttgtgtgattgatttagatgatgaggatcgtgtaagaaatgtat |
30400303 |
T |
|
| Q |
236 |
tttgggtggatggaaagggtagagatga |
263 |
Q |
| |
|
|||| || |||| ||| ||||||||||| |
|
|
| T |
30400304 |
tttgagtagatgtaaaaggtagagatga |
30400331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 263
Target Start/End: Original strand, 30406662 - 30406888
Alignment:
| Q |
38 |
ccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgtttgaattt--agaatcaggagat |
135 |
Q |
| |
|
|||||||||| ||| ||||||| || ||||||||||||||||||| |||||||| |||||||||| |||| |||| ||| ||| || ||||| |
|
|
| T |
30406662 |
ccaaacaacatggatgatatgaaaacattggttgcttggagaaagacattagaaatcatttagataaaagtcgtcatttggctttttagagtcgggagac |
30406761 |
T |
|
| Q |
136 |
gcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatggtcgtgtaaaaaatgtat |
235 |
Q |
| |
|
|||| ||||||| |||||| ||| |||| |||||||||| ||||| ||||| |||| || ||||||| |||||||| | |||||||| |||||||| |
|
|
| T |
30406762 |
gcaactgcaatgttggagtgttt-atgcttatgcaagaataaaatcttagatttttttgtgtgattgatttagatgatgaggatcgtgtaagaaatgtat |
30406860 |
T |
|
| Q |
236 |
tttgggtggatggaaagggtagagatga |
263 |
Q |
| |
|
|||| || |||| ||| ||||||||||| |
|
|
| T |
30406861 |
tttgagtagatgtaaaaggtagagatga |
30406888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 33002229 - 33002477
Alignment:
| Q |
18 |
caaaatctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggagaaagatgttagaaattatttagataaggaccgtcgtttg |
117 |
Q |
| |
|
|||||| || |||||||||||||||||||| ||||| ||||| || |||| |||||||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
33002229 |
caaaattttcgccacaatggccaaacaacatggagggtatgaaaacattggatgcttggagaaagacattagaaatcatttagataaaagtcgtcgtttg |
33002328 |
T |
|
| Q |
118 |
aatttagaatcaggagatgcaaatgcaatgctggagtattttatgcgtatgcaagaagaaaattcaagattcttttatgcatttgatttggatgatgatg |
217 |
Q |
| |
|
||||| || |||||||||| ||||| |||||| |||||||| |||||||||||||||| | ||||| ||||||||| |||||||||||||||| | |
|
|
| T |
33002329 |
gcattagagtcgggagatgcaacaacaatgttggagtgttttatgcttatgcaagaagaaaatcctagatt-ttttatgcaattgatttggatgatgaag |
33002427 |
T |
|
| Q |
218 |
gtcgtgtaaaaaatgtattttgggtggatggaaagggtagagatgattat |
267 |
Q |
| |
|
|||||||| ||| |||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
33002428 |
atcgtgtaagaaacgtattttgggtggatgcaaaaggtagagatgattat |
33002477 |
T |
|
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