View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11150_high_28 (Length: 240)

Name: NF11150_high_28
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11150_high_28
NF11150_high_28
[»] chr5 (2 HSPs)
chr5 (1-64)||(39039925-39039988)
chr5 (160-223)||(39039755-39039818)
[»] chr2 (1 HSPs)
chr2 (1-64)||(2020255-2020318)
[»] chr4 (1 HSPs)
chr4 (1-89)||(23127295-23127381)
[»] chr1 (3 HSPs)
chr1 (1-94)||(47926609-47926706)
chr1 (1-61)||(50372898-50372958)
chr1 (56-89)||(30721793-30721826)


Alignment Details
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39039988 - 39039925
Alignment:
Q  1 tttaaacaatggcttatttatcatttcaaaaaattactatctttctctcttctcaatttctctt 64  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39039988 tttaaacaatggcttatttatcatttcaaaaaattactatctttttctcttctcaatttctctt 39039925  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 39039818 - 39039755
Alignment:
Q  160 aaaccaaacacacccttagagaaagtaaccgcccacatctggagcaaagggaggccaaaacatg 223  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  39039818 aaaccaaacacacccttagatgaagtaaccgcccacatctggagcaaagggaggccaaaacatg 39039755  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2020318 - 2020255
Alignment:
Q  1 tttaaacaatggcttatttatcatttcaaaaaattactatctttctctcttctcaatttctctt 64  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2020318 tttaaacaagggcttatttgtcatttcaaaaaattactatctttctctcttctcaatttctctt 2020255  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23127295 - 23127381
Alignment:
Q  1 tttaaacaatggcttatttatcatttcaaaaaattactatctttctctcttctcaatttctcttataccaaaccataaatcaaatctac 89  Q
    ||||||||| ||||||||| | |||||||||||||| |||| ||||||||||||  |||||||| |||||||||||| |||||||||||    
T  23127295 tttaaacaagggcttatttgttatttcaaaaaattattatcgttctctcttctc--tttctcttgtaccaaaccatacatcaaatctac 23127381  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 47926609 - 47926706
Alignment:
Q  1 tttaaacaatggcttatttatcatttcaaaaaattactatctttctctcttctcaat-----ttctcttataccaaaccataaatcaaatctaccctat 94  Q
    ||||||| | ||||||||| |||||||||||||||||||||||||| | ||||||||     ||||||||||||||||||| |||||||||||| ||||    
T  47926609 tttaaacgagggcttatttgtcatttcaaaaaattactatctttcttttttctcaatttctcttctcttataccaaaccat-aatcaaatctactctat 47926706  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 50372958 - 50372898
Alignment:
Q  1 tttaaacaatggcttatttatcatttcaaaaaattactatctttctctcttctcaatttct 61  Q
    ||||||||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||    
T  50372958 tttaaacaatggcttatttgtcatttcaaaaaaataatatctttttctcttctcaatttct 50372898  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 30721826 - 30721793
Alignment:
Q  56 atttctcttataccaaaccataaatcaaatctac 89  Q
    |||||||||||||||||||||| |||||||||||    
T  30721826 atttctcttataccaaaccatacatcaaatctac 30721793  T

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