View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_high_3 (Length: 548)
Name: NF11150_high_3
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 48366929 - 48366639
Alignment:
| Q |
10 |
gcagagaccagaaaaacttgtatcatcaattttcttcattctttgtgccattctcatcttatctcccaagcatgctggcattcaaatttcttcttataaa |
109 |
Q |
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| T |
48366929 |
gcagtgaccagaaaaacttgtatcatcaattttcttcattctttgtcccattctcatcttatctcccaagcatgctggcattcaaatttcttcttataaa |
48366830 |
T |
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| Q |
110 |
atgcactttttattgaagaaaataagttaatttgatagtttataaatttagcgcagaaccaaatcacatattcataacatcgtcatggacataaggcaaa |
209 |
Q |
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| T |
48366829 |
atgcactttttattgaagaaaataagttaatttgatagtttataaatttagcgcagaaccaaatcacatattcataacatcgtcatggacataaggcaaa |
48366730 |
T |
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| Q |
210 |
atgtttgattattctctctttgaaataagtaaaagtttatttgaattctcttttctaatacaccgttttgaaaagtgaaggctcacatggt |
300 |
Q |
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| T |
48366729 |
atgtttgattattctctctttgaaataagtaaaagtttatttgaattctcttttctaatacaccgttttgaaaagtgaaggctcacatggt |
48366639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 335 - 535
Target Start/End: Complemental strand, 48366527 - 48366326
Alignment:
| Q |
335 |
tctaaaaataaaacagataatcaagtcaacgtgtatagacagacagacagactcaagggaagaagttcaaccttaggacgaaattttacattggttccac |
434 |
Q |
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| T |
48366527 |
tctaaaaataaaacagataataaagtcaacgtgtatagacagacagacagactcaagggaagaagttcaaccttaggacgaaattttacattggttccac |
48366428 |
T |
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| Q |
435 |
tacaaggttggtacataagtattgccaacactctctgttaaggcctttattttcactctatttatattgaaccagtctcaacactcatac-ataactcat |
533 |
Q |
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| T |
48366427 |
tacaaggttggtacataagtattgccaacactctctgttaaggcctttattttcactctatttatattgaaccagtctcaacactcatactataactcat |
48366328 |
T |
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| Q |
534 |
ga |
535 |
Q |
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|| |
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| T |
48366327 |
ga |
48366326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 48366592 - 48366550
Alignment:
| Q |
293 |
cacatggtcttaacctcagaacaacttatatattttatcattt |
335 |
Q |
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| T |
48366592 |
cacaaggtcttaacctcagaacaacttatatattttatcattt |
48366550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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