View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_high_31 (Length: 222)
Name: NF11150_high_31
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 39553836 - 39554019
Alignment:
| Q |
17 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
116 |
Q |
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| T |
39553836 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
39553935 |
T |
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| Q |
117 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatg |
200 |
Q |
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| T |
39553936 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatg |
39554019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 39543817 - 39544000
Alignment:
| Q |
17 |
cagagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggat |
116 |
Q |
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| T |
39543817 |
cagagatggggacatacatgtcataaagtgaaggatgtatggaaggtgggcgtcgtggggtcataagtgaccgtctaaaacaaggttgcattgttgggat |
39543916 |
T |
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| Q |
117 |
caaagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatg |
200 |
Q |
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| T |
39543917 |
caaagacttgttattgttgggtcgagctatctcggcccatgatacaaggaacatgtttgcagaatatgcgtccgctatacgatg |
39544000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 39586948 - 39587129
Alignment:
| Q |
19 |
gagatggggacatacatgtcataaattgaaggatggatggaaggtgggcgtcgtggggtcagaagtgaccgtcgaaaacaaggttgcgttgttgggatca |
118 |
Q |
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| T |
39586948 |
gagatggggatgtacatgtcatagagtgaaggatggatggaaggtgggtgtcttggggtcagaagggacctttgaaaacaaggttgtgttgttgggatca |
39587047 |
T |
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| Q |
119 |
aagacttgttatcattgggccgagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatg |
200 |
Q |
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| T |
39587048 |
aagacttgttattgctcgatcgggctatctcggcccatgatacaagaaacatgtttgcagaataggcgtcggctattcgatg |
39587129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 17503782 - 17503837
Alignment:
| Q |
145 |
atctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatg |
200 |
Q |
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| T |
17503782 |
atctcggcccatgatactaggaacatgtttgttgaatatgcatctgctatgcgatg |
17503837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 17475654 - 17475714
Alignment:
| Q |
140 |
gagctatctcggcccatgatacaaggaacatgtttgcagaataggcatcagctatacgatg |
200 |
Q |
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| T |
17475654 |
gagccatctcggcccatgatactaagaacatgtttgttgagtaggcatctgctatgcgatg |
17475714 |
T |
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