View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_10 (Length: 462)
Name: NF11150_low_10
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 36 - 445
Target Start/End: Complemental strand, 12909550 - 12909133
Alignment:
| Q |
36 |
aatttatctgcattaatcaaaaatcaaatatgatggttattgtggaagatgatactttctcttcaatttagtggctaaagaaaatgtagaatagaagnnn |
135 |
Q |
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| T |
12909550 |
aatttatctgcattaatcaaaaatcaaatatgatggttattgtggaagatgatactttctctccaatttagtggctaaagaaaatgtagaatagaagaaa |
12909451 |
T |
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| Q |
136 |
nnnng-----------gataattagtacgtccttacattatatgaaatctgttaatttagtctattaaatgtttaaaattataggactaattaaattggc |
224 |
Q |
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| T |
12909450 |
aaaagaagaaaaaaaggataattagtacgtctttacattatatgaaatctgttaatttagtctattaaatgtttaaaattataggactaattaaattagc |
12909351 |
T |
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| Q |
225 |
aaactttttacactttaataaatagttttttctatataaggcatataaatgtaacaactattttnnnnnnnnnnnnnnntagttgttatatttatatgct |
324 |
Q |
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| T |
12909350 |
aaactttttacactttaataaatagttttttctatataaagcatataaatgtaacaactattttcaaaaaaaataaaaatagttgttatatttatatgct |
12909251 |
T |
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| Q |
325 |
ttatatagattaaattagagatggaatgatggnnnnnnnnnnnnaataaaataattgatgatctattcatgtaaatgaaatgcatgggtttaatttcgtt |
424 |
Q |
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| T |
12909250 |
ttatatagattaaattagagatggaatgatg---ttttttttttaataaaataattgatgatctattcatgtaaatgaaatgcatgggtttaatttcgtt |
12909154 |
T |
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| Q |
425 |
gaatatgtccacatccaacac |
445 |
Q |
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| T |
12909153 |
gaatatgtctacatccaacac |
12909133 |
T |
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