View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11150_low_11 (Length: 414)

Name: NF11150_low_11
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11150_low_11
NF11150_low_11
[»] chr1 (1 HSPs)
chr1 (1-388)||(35044820-35045228)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 35044820 - 35045228
Alignment:
Q  1 attgagaatggagtaatcatcaagacagaaatatgaacggattaaataaataagttaatcaaaccaataatttccaaatgcactttgagtaacttgacat 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35044820 attgagaatagagtaatcatcaagacagaaatatgaacggattaaataaaaaagttaatgaaaccaataatttccaaatgcactttgagtaacttgacat 35044919  T
Q  101 caattaatttattaaatcaacttaaaaacaacttaaattgagaataggtgacttgaataa---------------------cttaaataactcacttcta 179  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||                     |||||||||||||||||||    
T  35044920 caattaatttattaaatcacctttaaaacatcttaaattgagaataggtgacttgaagaagttttctcaagaaaaaaaaaacttaaataactcacttcta 35045019  T
Q  180 gctttctaactactctttaatcacaactaccacattctcttattttatttcacttcaaaccttaattgaataaaaatgggataaaatccactgacggaac 279  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  35045020 gctttctaactactctctaatcacaactaccacattctcttattttatttcacttcaaaccttaattgaataaaaatgtgataaaatccactgactgaac 35045119  T
Q  280 cataccatgatgccctttgagactctccaaagtgtctttgtctcaattataatcgattgttgtattgtagttgtgagttgcatttgcttcacttcagata 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35045120 cataccatgatgccctttgagactctccaaagtgtctttgtctcaattataatcaattgttgtattgtagttgtgagttgcatttgcttcacttcagata 35045219  T
Q  380 aatggtgtg 388  Q
    |||||||||    
T  35045220 aatggtgtg 35045228  T

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