View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_15 (Length: 356)
Name: NF11150_low_15
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 138 - 356
Target Start/End: Complemental strand, 3939071 - 3938858
Alignment:
| Q |
138 |
gagagttttgagtaggggaaaatctaactgaggacagatatacattttcagtgacttcaacttgagaaccacaaggttcctgcaattaaaaacagtggaa |
237 |
Q |
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| T |
3939071 |
gagagttttgagtaggggaaaatctaactgaggacagatatacattttcagtgacttcaacttgagaaccacaaggttcctgcaattaaaaacagtggaa |
3938972 |
T |
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| Q |
238 |
attataggatccaatcggatttgaaaatcatcatcagtgccagacaagtctaaggtaaggtaagattatcaattcctcgttttacagcaacagaaatgaa |
337 |
Q |
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| T |
3938971 |
attataggatccaatcggatttgaaaatcatcatcagtgccagacaagtctaagg-----taagattatcaattcctcgttttacagcaacagaaatgaa |
3938877 |
T |
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| Q |
338 |
tcgattgatatcatatgga |
356 |
Q |
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| T |
3938876 |
tcgattgatatcatatgga |
3938858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 3939397 - 3939321
Alignment:
| Q |
1 |
tagaatttaaagtgaagtttgacaattattgtaaatttagctagtgagaagtgacactcataccagttcaaaacgaa |
77 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3939397 |
tagaatttaaagtgaagtttgacaattattgtaactttagctagtgagaagtgacactcataccagaccaaaacgaa |
3939321 |
T |
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