View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11150_low_16 (Length: 352)
Name: NF11150_low_16
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 14193735 - 14193669
Alignment:
| Q |
102 |
atcttcaccacctgcataagcttttcatccaacagaaagtaaagagaattgaaatatccctgtttaa |
168 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14193735 |
atcttcaacacctgcataagctttccatccaacagaaagtaaacagaattgaaatatccctgtttaa |
14193669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 14193794 - 14193740
Alignment:
| Q |
11 |
cagagaaataaaaccacaaagtcaatcaacaacttggaaaattcaaataacctca |
65 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14193794 |
cagagaaataaaaccataaggtcaatcaacaacttggaaaattcaaataacctca |
14193740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 14193626 - 14193515
Alignment:
| Q |
229 |
gtagcagccaaaactcctatgattttcaaaggattagattgcatttcg---------cggataaagttcctactggtctcataacaaagccggggtttat |
319 |
Q |
| |
|
||||||||||||||||||| ||||||| || || |||||||||||||| || ||||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
14193626 |
gtagcagccaaaactcctacgattttccaacgagtagattgcatttcgcgaccttctcgaataaagttcctactggtctcataaccaatccggcatttat |
14193527 |
T |
|
| Q |
320 |
gccagataagtc |
331 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
14193526 |
gccacataagtc |
14193515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University