View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_17 (Length: 330)
Name: NF11150_low_17
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 49247640 - 49247782
Alignment:
| Q |
18 |
aaaggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaaggaaatggctccgcaagcagaa |
117 |
Q |
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| T |
49247640 |
aaaggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaaggaaatggctcagcaagcagaa |
49247739 |
T |
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| Q |
118 |
accaaagtaacgactcaggaagaagaaaccaaagtaatggctc |
160 |
Q |
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| T |
49247740 |
accaaagtaacgactcaggaagaagaaaccaaagtaatggctc |
49247782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 49247876 - 49247936
Alignment:
| Q |
254 |
ccaaagaagcggttgaggaagagattgtggccaaagaagaagaaaccaatgtgacaaaagt |
314 |
Q |
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| T |
49247876 |
ccaaagaagcggttcaggaagagattgtggccaaagaagaagaaaccaatgtgacaaaagt |
49247936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 49247753 - 49247825
Alignment:
| Q |
23 |
ctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaa |
95 |
Q |
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| T |
49247753 |
ctcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaagaaaccaa |
49247825 |
T |
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