View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_18 (Length: 319)
Name: NF11150_low_18
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 110 - 303
Target Start/End: Original strand, 7447069 - 7447274
Alignment:
| Q |
110 |
ggagatgtacatggatctcctattttcttctctcgctctcagtatattaccgctttctttgatttgtgaagttgctcttatttattgtttaaatcacttt |
209 |
Q |
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| T |
7447069 |
ggagatgtacatggatctcctattctcttctctcgctctcagtatattaccgctttctttgatttgtgaagttgctcttatttattgtttaaatcacttt |
7447168 |
T |
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| Q |
210 |
acatccaagtc------------aatcaattttacttaaataattcactcaaagtcgacaaagatggtttaagattacttattccataatcaaaagtata |
297 |
Q |
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| T |
7447169 |
acatccaagtcacttttatatggaatcaattttacttaaataattcactcaaagtcgacaaagatggtttaagattacttattccataatcaaaagtata |
7447268 |
T |
|
| Q |
298 |
gatctg |
303 |
Q |
| |
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|||||| |
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| T |
7447269 |
gatctg |
7447274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 110 - 303
Target Start/End: Original strand, 7455211 - 7455416
Alignment:
| Q |
110 |
ggagatgtacatggatctcctattttcttctctcgctctcagtatattaccgctttctttgatttgtgaagttgctcttatttattgtttaaatcacttt |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7455211 |
ggagatgtacatggatctcctattctcttctctcgctctcagtatattaccgctttctttgatttgtgaagttgctcttatttattgtttaaatcacttt |
7455310 |
T |
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| Q |
210 |
acatccaagtc------------aatcaattttacttaaataattcactcaaagtcgacaaagatggtttaagattacttattccataatcaaaagtata |
297 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7455311 |
acatccaagtcacttttatatggaatcaattttacttaaataattcactcaaagtcgacaaagatggtttaagattacttattccataatcaaaagtata |
7455410 |
T |
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| Q |
298 |
gatctg |
303 |
Q |
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|||||| |
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| T |
7455411 |
gatctg |
7455416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7446960 - 7447001
Alignment:
| Q |
1 |
cagaattatacatcaagttttgttggataatagtgtataata |
42 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446960 |
cagaattatacatcaagttttgttggataatagtgtataata |
7447001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7455102 - 7455143
Alignment:
| Q |
1 |
cagaattatacatcaagttttgttggataatagtgtataata |
42 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
7455102 |
cagaattatacatcaagttttgttggataatagtgtataata |
7455143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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