View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11150_low_19 (Length: 304)
Name: NF11150_low_19
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_19 |
 | |
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| [»] chr8 (5 HSPs) |
| |
|
| [»] scaffold0015 (1 HSPs) |
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|
| [»] chr7 (5 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 304
Target Start/End: Complemental strand, 9810768 - 9810467
Alignment:
| Q |
3 |
catatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatg |
102 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
9810768 |
catatccatttgtaccaatactcctactatttctcactttttgtttacagatgactgctttttatttttcagggcagaggagaaggaagcacaagttatg |
9810669 |
T |
|
| Q |
103 |
aagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttccacctcctatgaagt |
202 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9810668 |
aagaacattcttcatacatatgaattagcgtccgggcaggccattagccttccaaagtctgaagttttctttagcattgttgttccacctcctatgaagt |
9810569 |
T |
|
| Q |
203 |
ataccatcaccaacatccttggagtcagagcgctaatgggaaatatcttggtttaccgtctatggtgggtcgaagcaaagaagcgacatttggtttcatt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9810568 |
ataccatcaccaacatccttggagtcagagcggtaatgggaaatatcttggtatatcgtctatggtgggtcgaagcaaagaagcgacatttggtttcatt |
9810469 |
T |
|
| Q |
303 |
aa |
304 |
Q |
| |
|
|| |
|
|
| T |
9810468 |
aa |
9810467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 18177205 - 18177396
Alignment:
| Q |
10 |
atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | |||||| || |||| |||||||| ||||||||||| | || || | || || || |||||||| | |
|
|
| T |
18177205 |
atttgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcagggctgatgataatgaggcgcaagtgatgaagaata |
18177304 |
T |
|
| Q |
110 |
ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttccacctcctatgaag |
201 |
Q |
| |
|
| ||| |||| |||||| |||| | |||||||||||||||||| |||| || | |||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
18177305 |
tccttcatacttatgaactagctttggggcaggccattagccttccaaattcctaggttttcttcagccgtgttgttccaccgcctttgaag |
18177396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 26970075 - 26969927
Alignment:
| Q |
13 |
tgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattc |
112 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||| || |||| |||||||| ||||||||||| | || || | ||||| || |||||||| |||| |
|
|
| T |
26970075 |
tgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcagggctgatgataatgaggcacaagtgatgaagaatattc |
26969976 |
T |
|
| Q |
113 |
ttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtc |
161 |
Q |
| |
|
| |||| |||||| | || || |||||||||||||| ||| ||||||| |
|
|
| T |
26969975 |
tccatacttatgaacttgcttcggggcaggccattagtcttccaaagtc |
26969927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 26953414 - 26953332
Alignment:
| Q |
91 |
gcacaggttatgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctt |
173 |
Q |
| |
|
||||| || |||||||| ||||| |||| |||||| | || || |||||||||||||| ||| |||||||||| |||||||| |
|
|
| T |
26953414 |
gcacaagtgatgaagaatattctccatacttatgaacttgcttcggggcaggccattagtcttccaaagtctgaggttttctt |
26953332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 18177460 - 18177500
Alignment:
| Q |
258 |
ccgtctatggtgggtcgaagcaaagaagcgacatttggttt |
298 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
18177460 |
ccgtctatggtgggcagaagcaaagaggcgacatttggttt |
18177500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 34 - 304
Target Start/End: Complemental strand, 15603 - 15326
Alignment:
| Q |
34 |
tctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattcttgatacatatgaattagcgt |
133 |
Q |
| |
|
|||||| |||| ||| || | |||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| || ||| ||||||| |||| | |
|
|
| T |
15603 |
tctcaccttttatttgcagaggactgctttttatttttcagggcagaggagaaggaagcacaagttatgaagaacatttttcataaatatgaaatagcat |
15504 |
T |
|
| Q |
134 |
ccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttccacctcctatgaagtataccatcaccaacatccttggagtcagagc |
233 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
15503 |
ccgggcaagccattagcctttcaaagtctgaagttttctttagcactgttgttccatctcctattaaggataccatcaccaacatcctaggagtcagagc |
15404 |
T |
|
| Q |
234 |
gct-------aatgggaaatatcttggtttaccgtctatggtgggtcgaagcaaagaagcgacatttggtttcattaa |
304 |
Q |
| |
|
| | | |||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
15403 |
ggtagtgggaactgggaaatatcttggtcttccgtctatggtgggtcgaagcaaagaggcaacatttggtttcattaa |
15326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 83 - 304
Target Start/End: Original strand, 20489336 - 20489562
Alignment:
| Q |
83 |
agaagtaagcacaggttatgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgt |
182 |
Q |
| |
|
||||| ||||||| |||||||| |||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
20489336 |
agaaggaagcacaagttatgaa--acattcttcatacatatgaattagcgtccgatcaagccattagccttccaaagtctgaagttttctttaacattgt |
20489433 |
T |
|
| Q |
183 |
tgttccacctcctatgaagtataccatcaccaacatccttggagtcagagcgctaat-------gggaaatatcttggtttaccgtctatggtgggtcga |
275 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||| | | |||||||||| | || |
|
|
| T |
20489434 |
tgttccatctcctatgaaggataccatcaccaacatccttggagtcagagcggtaatggaaacaggcaaatatcttggtcttctatctatggtggattga |
20489533 |
T |
|
| Q |
276 |
agcaaagaagcgacatttggtttcattaa |
304 |
Q |
| |
|
|||||||| || ||||||||||||||||| |
|
|
| T |
20489534 |
agcaaagaggcaacatttggtttcattaa |
20489562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 9816275 - 9816099
Alignment:
| Q |
1 |
ggcatatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggtta |
100 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| | || ||| || ||||||| ||||| |||||||||||| | ||||| |||| |||||| |
|
|
| T |
9816275 |
ggcatatctatttgtactcatgcacctactatttctcacctcttatttgcagatgactg-tttttgtttttcagggcagatgagaatgaagcgtaggtta |
9816177 |
T |
|
| Q |
101 |
tgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagca |
178 |
Q |
| |
|
||||||| ||||| | || ||||| ||||| || |||| | | ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
9816176 |
tgaagaatattctccacacttatgagttagcttcggggctgactattagccttccaaaatctgaagttttctttagca |
9816099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 10718200 - 10718024
Alignment:
| Q |
1 |
ggcatatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggtta |
100 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| | || ||| || ||||||| ||||| |||||||||||| | ||||| |||| |||||| |
|
|
| T |
10718200 |
ggcatatctatttgtactcatgcacctactatttctcacctcttatttgcagatgactg-tttttgtttttcagggcagatgagaatgaagcgtaggtta |
10718102 |
T |
|
| Q |
101 |
tgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagca |
178 |
Q |
| |
|
||||||| ||||| | || ||||| ||||| || |||| | | ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
10718101 |
tgaagaatattctccacacttatgagttagcttcggggctgactattagccttccaaaatctgaagttttctttagca |
10718024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 10326644 - 10326580
Alignment:
| Q |
180 |
tgttgttccacctcctatgaagtataccatcaccaacatccttggagtcagagcgctaatgggaa |
244 |
Q |
| |
|
||||||||| ||||||| ||| || |||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
10326644 |
tgttgttccctctcctataaaggatgccatcaccaatatccttggagtcagagcactaatgggaa |
10326580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 16168238 - 16168190
Alignment:
| Q |
243 |
aaatatcttggtttaccgtctatggtgggtcgaagcaaagaagcgacat |
291 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| ||| ||||||||| |
|
|
| T |
16168238 |
aaatatcttggtttaccgtctatggtaggcagaagtaaaaaagcgacat |
16168190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 37840805 - 37840534
Alignment:
| Q |
29 |
ctatttctcactttttgtttacatatgactgcttttt-atttttcagggcaaaggagaagtaagcacaggttatgaagaacattcttgatacatatgaat |
127 |
Q |
| |
|
||||||||||| |||||||| | |||||| |||||| ||||||||||||||| || || ||||||| || ||||| || |||||| |||| |||||| |
|
|
| T |
37840805 |
ctatttctcaccttttgtttgtagatgactacttttttatttttcagggcaaatgaaaaagaagcacatgtaatgaaaaatattcttcatacctatgaag |
37840706 |
T |
|
| Q |
128 |
tagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttccacctcctatgaagtataccatcaccaacatccttggagt |
227 |
Q |
| |
|
|||| | || |||| |||||||||| |||| |||||||| ||||||| | | |||||||| ||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
37840705 |
tagcattaggacaggtcattagccttccaaaacctgaagttgtctttagaactattgttccatctcctatgaaggatgtcatcaccaacatctttggagt |
37840606 |
T |
|
| Q |
228 |
cagagcgctaatggg-------aaatatcttggtttaccgtctatggtgggtcgaagcaaagaagcgacatt |
292 |
Q |
| |
|
||||||| ||||||| |||| | ||||| | ||||||||||| |||||||||||||| || ||||| |
|
|
| T |
37840605 |
cagagcggtaatgggaactcgcaaattttttggtgttccgtctatggtaggtcgaagcaaagaggcaacatt |
37840534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 23061397 - 23061218
Alignment:
| Q |
10 |
atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | |||||| || |||| |||||||| ||||||| || | || || | ||||| || |||||||| | |
|
|
| T |
23061397 |
atttgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcaaggttgatgataatgaggcacaagtgatgaagaata |
23061298 |
T |
|
| Q |
110 |
ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca |
189 |
Q |
| |
|
|||| |||| |||||| | || || |||||| ||||||| ||| |||||| ||| |||||||| || | |||||||||| |
|
|
| T |
23061297 |
ttctccatacttatgaacttgcttcggggcagaccattagtcttccaaagtatgaggttttcttcagtactgttgttcca |
23061218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 32881709 - 32881872
Alignment:
| Q |
10 |
atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | |||||| || |||| |||||||| ||||||||| | || ||| | ||||| || |||||||| | |
|
|
| T |
32881709 |
atttgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcaggattgacgataaggaggcacaagtgatgaagaata |
32881808 |
T |
|
| Q |
110 |
ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctt |
173 |
Q |
| |
|
||| |||| |||||| | || || |||||| ||||||| ||| ||||||| || |||||||| |
|
|
| T |
32881809 |
ctctacatacttatgaacttgcttcggggcagaccattagtcttccaaagtccgaggttttctt |
32881872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 19317910 - 19317834
Alignment:
| Q |
2 |
gcatatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggca |
78 |
Q |
| |
|
||||||| || ||||| ||||| || | |||||||||| |||| ||| |||||||||| ||||| |||||||||||| |
|
|
| T |
19317910 |
gcatatctatatgtactaatgctcccattatttctcacattttatttgcatatgactgttttttgtttttcagggca |
19317834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 15230645 - 15230833
Alignment:
| Q |
1 |
ggcatatccatttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggtta |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||| |||||||| || ||||||| |||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
15230645 |
ggcatatctatttgtactcatgcacctactatttgtcaccttttgtttgcagatgactgttttttatttttcagggcaaatgagaaagaagcgtaggtta |
15230744 |
T |
|
| Q |
101 |
tgaagaacattcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca |
189 |
Q |
| |
|
||||||| |||||| |||| || | |||| || || || | ||||||||| |||| | ||||| ||||||||||||||||||||| |
|
|
| T |
15230745 |
tgaagaatattcttcatacttacaagctagcttcgggacatgttattagccttccaaaatttgaagccttctttagcattgttgttcca |
15230833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 39284938 - 39285220
Alignment:
| Q |
19 |
aatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattcttgata |
118 |
Q |
| |
|
||||| |||||||||||||| |||||||| | |||||||||||||||||||||||| | | ||||| ||||||| || ||||||| |||||| | | |
|
|
| T |
39284938 |
aatgctcctactatttctcatcttttgtttggagatgactgctttttatttttcagggtagatgagaatgaagcacatgtaatgaagactattcttcaca |
39285037 |
T |
|
| Q |
119 |
catatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttccacctcctatgaagtataccatcaccaacat |
218 |
Q |
| |
|
|||| |||||||| | ||| || || ||| ||| |||| || |||||||||||||| | |||||||| ||| || |||| | ||||| ||||| |
|
|
| T |
39285038 |
catacgaattagcattggggtgggacactagtcttccaaaatcagaagttttctttagaactgttgttcactctcatacgaaggacgttatcactaacat |
39285137 |
T |
|
| Q |
219 |
ccttggagtcagagcgctaatggg-------aaatatcttggtttaccgtctatggtgggtcgaagcaaagaagcgacatttg |
294 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||| | ||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
39285138 |
ccttggagtcagagctgtaatgggaacaaaaaaataccttggtcttccgtctatggtgggtagaagcaaagaggcgatatttg |
39285220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 27875758 - 27875937
Alignment:
| Q |
10 |
atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca |
109 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| | |||||| ||||||| |||||||| |||||||||| | || | |||| || || |||||||||| |
|
|
| T |
27875758 |
atttgtactaatgcacctaccatttctcacctcttgtttgcatatgattgctttttgtttttcagggttgatgacagtgaagcgcaagtgatgaagaaca |
27875857 |
T |
|
| Q |
110 |
ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca |
189 |
Q |
| |
|
|||| |||| |||||| |||| || |||||||||||||| ||| ||||||| || ||||| || |||| ||||||||| |
|
|
| T |
27875858 |
ttctccatacttatgaactagcttcagggcaggccattagtcttccaaagtccgaggtttttttcagcaaagttgttcca |
27875937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 10396096 - 10396032
Alignment:
| Q |
10 |
atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcag |
74 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | | ||| || ||||||| ||||| |||||||| |
|
|
| T |
10396096 |
atttgtactaatgcacctactatttctcacctcctatttgcagatgactgttttttgtttttcag |
10396032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 28592005 - 28591829
Alignment:
| Q |
13 |
tgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattc |
112 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||| || |||| |||||||| ||||||||||| | || || | ||||| || |||||||| |||| |
|
|
| T |
28592005 |
tgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcagggctgatgataatgaggcacaagtgatgaagaatattc |
28591906 |
T |
|
| Q |
113 |
ttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca |
189 |
Q |
| |
|
| |||| |||||| | || || |||||||||||||| ||| |||||||||| |||||||| || | |||||||||| |
|
|
| T |
28591905 |
tccatacttatgaacttgcttcggggcaggccattagtcttccaaagtctgaggttttcttcagtactgttgttcca |
28591829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 25906399 - 25906220
Alignment:
| Q |
10 |
atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaaca |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | |||||| || |||| |||||||| ||||||||||| | || || | ||||| || |||||||| | |
|
|
| T |
25906399 |
atttgtactaatgcacctactatttctcacctattgtttgcagatgattgctttttgtttttcagggctgatgataatgaggcacaagtgatgaagaata |
25906300 |
T |
|
| Q |
110 |
ttcttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctttagcattgttgttcca |
189 |
Q |
| |
|
|||| |||| |||||| | || || |||||||||||||| ||| ||||||| || |||||||| || | |||||||||| |
|
|
| T |
25906299 |
ttctccatacttatgaacttgcttcggggcaggccattagtcttccaaagtccgaggttttcttcagtagtgttgttcca |
25906220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 32894076 - 32894142
Alignment:
| Q |
10 |
atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcaggg |
76 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||| || |||| ||||||||||||||||||| |
|
|
| T |
32894076 |
atttgtactaatgcacctaccatttctcaccttttgtttgcaaatgattgctttttatttttcaggg |
32894142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 13108216 - 13108149
Alignment:
| Q |
10 |
atttgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggc |
77 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| | |||||| || |||||||| |||| ||||| ||||| |
|
|
| T |
13108216 |
atttgtactaatacacctactatttctcacctcttgtttgcagatgactgccttttcttttttagggc |
13108149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 30302927 - 30303087
Alignment:
| Q |
13 |
tgtaccaatgcacctactatttctcactttttgtttacatatgactgctttttatttttcagggcaaaggagaagtaagcacaggttatgaagaacattc |
112 |
Q |
| |
|
||||| ||||||||||| ||||||||| | |||||| || |||| |||||||| |||||||||| | || || | ||||| || |||||||| |||| |
|
|
| T |
30302927 |
tgtactaatgcacctaccatttctcacctattgtttgcagatgattgctttttgtttttcaggggtgatgataatgaggcacaagtgatgaagaatattc |
30303026 |
T |
|
| Q |
113 |
ttgatacatatgaattagcgtccgggcaggccattagcctttcaaagtctgaagttttctt |
173 |
Q |
| |
|
| |||| |||||| | || || |||||||||||||| ||| |||||||||| |||||||| |
|
|
| T |
30303027 |
tccatacttatgaacttgcttcggggcaggccattagtcttccaaagtctgaggttttctt |
30303087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 42435197 - 42435242
Alignment:
| Q |
144 |
cattagcctttcaaagtctgaagttttctttagcattgttgttcca |
189 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||| |||||||||| |
|
|
| T |
42435197 |
cattagccttccaaaatctgaagttttctttagcagtgttgttcca |
42435242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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