View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_24 (Length: 276)
Name: NF11150_low_24
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 9454525 - 9454770
Alignment:
| Q |
14 |
agagggaagagtaaaatattaatctaacaactaaatactaatatttgctattnnnnnnnnnnnnnnnn-ggaaatatattttctaaaacctaatcatctg |
112 |
Q |
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| T |
9454525 |
agagggaagagtaaa-tattaatctaacaactaaatactaatatttactattaaaaaaaatgtaaaaaaggaaatatattttctaaaacctaatcatctg |
9454623 |
T |
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| Q |
113 |
tctaatatgtatatatatcatcttgctccannnnnnnagttatagctcttaagaagttaatatatcttgagaatcctgatatggtgattttagtggaaag |
212 |
Q |
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| T |
9454624 |
tccaatatgtatatatatcatcttgctccatttttt-agttatagctcttaagaagttaatatatcttgagaatcctgatatggtgattttagtggaaag |
9454722 |
T |
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| Q |
213 |
caagagaaaataataaaaattatttcatattaaaaacatgtatagttt |
260 |
Q |
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| T |
9454723 |
caagagaaaataataaaaattatttcatattagaaacatgtatagttt |
9454770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 9398880 - 9398815
Alignment:
| Q |
156 |
agctcttaagaagttaatatatcttgagaatcctgatatggtgattttagtggaaagcaagagaaa |
221 |
Q |
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| T |
9398880 |
agctcataagaagttaatctatcttatgaatcctgatatgctgtttttaatggaatggaagagaaa |
9398815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 20016986 - 20016945
Alignment:
| Q |
20 |
aagagtaaaatattaatctaacaactaaatactaatatttgc |
61 |
Q |
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| T |
20016986 |
aagagtaaaatattaatctaacaaataagtactaatatttgc |
20016945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 41737979 - 41737941
Alignment:
| Q |
27 |
aaatattaatctaacaactaaatactaatatttgctatt |
65 |
Q |
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| T |
41737979 |
aaatattaatctaacaactaattactaatatttgttatt |
41737941 |
T |
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