View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_29 (Length: 245)
Name: NF11150_low_29
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 39579914 - 39579691
Alignment:
| Q |
1 |
agaattccggttttttggcgactccagctgctgcaggagggatatcccttagaagattaacatatggaaaaacaactcaaggctcgcctttacctaacat |
100 |
Q |
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| T |
39579914 |
agaattccggttttttggcgactcaagctgctgcaggagggatatcccttagaagattaacatatggaaaaacaactcaaggctcgcctttacctaacat |
39579815 |
T |
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| Q |
101 |
aaaccttggcctgaaaatctccttgcttgatcttcaattcgcaacagagaattttgatgcggataggataatcggaaaaggtggttttggaaatgtttat |
200 |
Q |
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| T |
39579814 |
aaaccttggcctgaaaatctccttgcttgatcttcaattcgcaacagagaattttgatgcggataggataatcggaaaaggtggttttggaaatgtttat |
39579715 |
T |
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| Q |
201 |
aagggagttctcaagaatggaatg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39579714 |
aagggagttctcaagaatggaatg |
39579691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 39575356 - 39575155
Alignment:
| Q |
23 |
tccagctgctgcaggagggatatcccttagaagattaacatatggaaaaacaactcaaggctcgcctttacctaacataaaccttggcctgaaaatctcc |
122 |
Q |
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|||| |||||||||||||||| || | ||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
39575356 |
tccaactgctgcaggagggatttctcatagcaaattaacttatggaaaaacaactcaaggctcacctttacctaacataaaccttggcatgaaaatctcc |
39575257 |
T |
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| Q |
123 |
ttgcttgatcttcaattcgcaacagagaattttgatgcggataggataatcggaaaaggtggttttggaaatgtttataagggagttctcaagaatggaa |
222 |
Q |
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| T |
39575256 |
ttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttttggaaatgtttataagggagttctcaagaatggaa |
39575157 |
T |
|
| Q |
223 |
tg |
224 |
Q |
| |
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|| |
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| T |
39575156 |
tg |
39575155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 39543521 - 39543320
Alignment:
| Q |
23 |
tccagctgctgcaggagggatatcccttagaagattaacatatggaaaaacaactcaaggctcgcctttacctaacataaaccttggcctgaaaatctcc |
122 |
Q |
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|||| |||||||||||| ||| || | ||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
39543521 |
tccaactgctgcaggagagatttctcatagcaaattaacttatggaaaaacaactcaaggctcacctttacctaacataaaccttggcatgaaaatctcc |
39543422 |
T |
|
| Q |
123 |
ttgcttgatcttcaattcgcaacagagaattttgatgcggataggataatcggaaaaggtggttttggaaatgtttataagggagttctcaagaatggaa |
222 |
Q |
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| T |
39543421 |
ttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttttggaaatgtttataagggagttctcaagaatggaa |
39543322 |
T |
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| Q |
223 |
tg |
224 |
Q |
| |
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|| |
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|
| T |
39543321 |
tg |
39543320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 77 - 221
Target Start/End: Complemental strand, 39510405 - 39510261
Alignment:
| Q |
77 |
tcaaggctcgcctttacctaacataaaccttggcctgaaaatctccttgcttgatcttcaattcgcaacagagaattttgatgcggataggataatcgga |
176 |
Q |
| |
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||||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| || || |||||||| | |||||||| ||| |
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| T |
39510405 |
tcaaggctcccctttacctaacataaacctcggattgaaaatccccttgcttgatcttcaattcgcaacggataactttgatgcaaagaggataattgga |
39510306 |
T |
|
| Q |
177 |
aaaggtggttttggaaatgtttataagggagttctcaagaatgga |
221 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
39510305 |
aagggtggttttggaattgtttataagggagttctcaggaatgga |
39510261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 39520686 - 39520519
Alignment:
| Q |
54 |
agattaacatatggaaaaacaactcaaggctcgcctttacctaacataaaccttggcctgaaaatctccttgcttgatcttcaattcgcaacagagaatt |
153 |
Q |
| |
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|||||||| ||| || ||||| ||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||| || |||| |
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| T |
39520686 |
agattaactgatgcaacaacaattcaaggctcacctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataatt |
39520587 |
T |
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| Q |
154 |
ttgatgcggataggataatcggaaaaggtggttttggaaatgtttataagggagttctcaagaatgga |
221 |
Q |
| |
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| T |
39520586 |
tcgatgcaaagaggattattggaaagggtggttttggaattgtttataagggagtcctcacgaatgga |
39520519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 39524171 - 39524092
Alignment:
| Q |
54 |
agattaacatatggaaaaacaactcaaggctcgcctttacctaacataaaccttggcctgaaaatctccttgcttgatct |
133 |
Q |
| |
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|||||||| ||| || ||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |
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| T |
39524171 |
agattaactgatgcaacaacaattcaaggctcgcctttacctaacataaaccttggattgaaaatccctttgcttgatct |
39524092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 5855207 - 5855170
Alignment:
| Q |
174 |
ggaaaaggtggttttggaaatgtttataagggagttct |
211 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||| |
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| T |
5855207 |
ggaaaaggtggttttggaaatgtttacaaaggagttct |
5855170 |
T |
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