View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_30 (Length: 240)
Name: NF11150_low_30
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 46325717 - 46325837
Alignment:
| Q |
64 |
atctatctgtttgtctgtgcacaaatatatttcattagctatatgagctagatgtactaaatttcaacaaggattcatttcaattcaaggtaattaatta |
163 |
Q |
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| T |
46325717 |
atctatctgtttgtctttgcacaaatatatttcattagctatatgagctagatgtactaaatttcaacaagcatacatttcaattcaaggtaattaatta |
46325816 |
T |
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| Q |
164 |
acatggttaattaagtaacaa |
184 |
Q |
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| T |
46325817 |
acatggttaattaagtaacaa |
46325837 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 46325639 - 46325667
Alignment:
| Q |
18 |
cataggtactttctaattacatttacaat |
46 |
Q |
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| T |
46325639 |
cataggtactttctaattacatttacaat |
46325667 |
T |
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