View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11150_low_32 (Length: 237)

Name: NF11150_low_32
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11150_low_32
NF11150_low_32
[»] chr2 (24 HSPs)
chr2 (4-190)||(45693089-45693275)
chr2 (132-180)||(1723279-1723327)
chr2 (131-176)||(1988287-1988332)
chr2 (145-177)||(346409-346441)
chr2 (135-177)||(13539643-13539685)
chr2 (131-177)||(14253497-14253543)
chr2 (145-178)||(6571661-6571694)
chr2 (144-177)||(21737463-21737496)
chr2 (144-177)||(27358026-27358059)
chr2 (144-177)||(37192497-37192530)
chr2 (144-177)||(37533927-37533960)
chr2 (144-177)||(45694163-45694196)
chr2 (145-177)||(2050841-2050873)
chr2 (145-177)||(2521650-2521682)
chr2 (146-178)||(3902430-3902462)
chr2 (145-177)||(5770174-5770206)
chr2 (145-177)||(6171766-6171798)
chr2 (145-177)||(11071580-11071612)
chr2 (145-177)||(14777562-14777594)
chr2 (145-177)||(18713721-18713753)
chr2 (145-177)||(37233404-37233436)
chr2 (145-177)||(39995195-39995227)
chr2 (145-177)||(40569995-40570027)
chr2 (145-177)||(42674725-42674757)
[»] scaffold0238 (1 HSPs)
scaffold0238 (131-177)||(23346-23392)
[»] scaffold0006 (1 HSPs)
scaffold0006 (131-177)||(119295-119341)
[»] chr5 (14 HSPs)
chr5 (131-181)||(19089767-19089817)
chr5 (133-178)||(28023807-28023852)
chr5 (145-177)||(4765624-4765656)
chr5 (146-176)||(830085-830115)
chr5 (144-177)||(8646454-8646487)
chr5 (145-178)||(18412183-18412216)
chr5 (145-178)||(20962564-20962597)
chr5 (144-177)||(27480984-27481017)
chr5 (144-177)||(29543078-29543111)
chr5 (144-177)||(31583125-31583158)
chr5 (145-177)||(11855719-11855751)
chr5 (145-177)||(12970594-12970626)
chr5 (145-177)||(27481332-27481364)
chr5 (145-177)||(28602530-28602562)
[»] chr3 (17 HSPs)
chr3 (131-177)||(33647753-33647799)
chr3 (144-179)||(18460912-18460947)
chr3 (145-176)||(43132221-43132252)
chr3 (131-177)||(44534194-44534240)
chr3 (144-177)||(6832019-6832052)
chr3 (144-177)||(31611048-31611081)
chr3 (144-177)||(43718993-43719026)
chr3 (145-177)||(6231565-6231597)
chr3 (145-177)||(12931005-12931037)
chr3 (145-177)||(20297768-20297800)
chr3 (145-177)||(24574550-24574582)
chr3 (145-177)||(26848997-26849029)
chr3 (145-177)||(31435987-31436019)
chr3 (145-177)||(33217977-33218009)
chr3 (145-177)||(40908240-40908272)
chr3 (145-177)||(46359927-46359959)
chr3 (145-177)||(47114921-47114953)
[»] chr1 (25 HSPs)
chr1 (133-179)||(16257060-16257106)
chr1 (131-177)||(20505039-20505085)
chr1 (145-177)||(2632828-2632860)
chr1 (145-177)||(3572629-3572661)
chr1 (132-176)||(19094090-19094134)
chr1 (145-177)||(30240985-30241017)
chr1 (146-177)||(37261823-37261854)
chr1 (131-177)||(11014491-11014537)
chr1 (131-177)||(13521297-13521343)
chr1 (131-177)||(19083155-19083201)
chr1 (131-177)||(19131043-19131089)
chr1 (144-178)||(29091641-29091675)
chr1 (144-178)||(52630748-52630782)
chr1 (132-177)||(19143578-19143623)
chr1 (144-177)||(39329584-39329617)
chr1 (145-177)||(1597406-1597438)
chr1 (145-177)||(2430472-2430504)
chr1 (145-177)||(5518568-5518600)
chr1 (145-177)||(6911469-6911501)
chr1 (145-177)||(12190241-12190273)
chr1 (145-177)||(20260150-20260182)
chr1 (145-177)||(36361758-36361790)
chr1 (132-176)||(37727001-37727045)
chr1 (145-177)||(46666684-46666716)
chr1 (145-177)||(46960603-46960635)
[»] scaffold1480 (1 HSPs)
scaffold1480 (132-177)||(436-481)
[»] scaffold0069 (1 HSPs)
scaffold0069 (132-177)||(21841-21886)
[»] chr7 (15 HSPs)
chr7 (131-176)||(10902700-10902745)
chr7 (131-176)||(30871164-30871209)
chr7 (144-177)||(44566020-44566053)
chr7 (145-177)||(48341337-48341369)
chr7 (145-176)||(45045602-45045633)
chr7 (131-178)||(47246116-47246163)
chr7 (133-178)||(5543183-5543228)
chr7 (144-177)||(45448917-45448950)
chr7 (144-177)||(48160654-48160687)
chr7 (145-177)||(9947054-9947086)
chr7 (145-177)||(11000677-11000709)
chr7 (145-177)||(27248268-27248300)
chr7 (145-177)||(33378817-33378849)
chr7 (145-177)||(35488253-35488285)
chr7 (145-177)||(40212864-40212896)
[»] chr8 (16 HSPs)
chr8 (146-178)||(29421554-29421586)
chr8 (145-177)||(32660997-32661029)
chr8 (145-177)||(37392610-37392642)
chr8 (130-177)||(35394365-35394412)
chr8 (144-177)||(1554417-1554450)
chr8 (145-177)||(3049984-3050016)
chr8 (145-177)||(7317348-7317380)
chr8 (145-177)||(16313571-16313603)
chr8 (145-177)||(18298087-18298119)
chr8 (145-177)||(18726683-18726715)
chr8 (145-177)||(21137196-21137228)
chr8 (144-176)||(25899608-25899640)
chr8 (145-177)||(26602002-26602034)
chr8 (145-177)||(35818488-35818520)
chr8 (145-177)||(38364056-38364088)
chr8 (145-177)||(43872030-43872062)
[»] chr4 (17 HSPs)
chr4 (144-176)||(52469678-52469710)
chr4 (131-177)||(44309739-44309785)
chr4 (144-178)||(50672968-50673002)
chr4 (131-181)||(51968752-51968802)
chr4 (144-177)||(6279984-6280017)
chr4 (144-177)||(27555389-27555422)
chr4 (144-177)||(34049660-34049693)
chr4 (144-177)||(39730356-39730389)
chr4 (145-177)||(936105-936137)
chr4 (144-180)||(10400868-10400904)
chr4 (145-177)||(13230053-13230085)
chr4 (145-177)||(25916097-25916129)
chr4 (145-177)||(27762963-27762995)
chr4 (145-177)||(42773927-42773959)
chr4 (145-177)||(45747860-45747892)
chr4 (144-176)||(47426304-47426336)
chr4 (145-177)||(48518955-48518987)
[»] chr6 (7 HSPs)
chr6 (144-178)||(345894-345928)
chr6 (131-177)||(6705815-6705861)
chr6 (144-178)||(16968899-16968933)
chr6 (145-177)||(2657675-2657707)
chr6 (145-177)||(7053634-7053666)
chr6 (145-177)||(14170988-14171020)
chr6 (145-177)||(18897896-18897928)
[»] scaffold0702 (1 HSPs)
scaffold0702 (145-177)||(3629-3661)
[»] scaffold0662 (1 HSPs)
scaffold0662 (145-177)||(4443-4475)
[»] scaffold0189 (1 HSPs)
scaffold0189 (145-177)||(29016-29048)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 45693275 - 45693089
Alignment:
Q  4 ttaaatagattaacggagatattgaatctcgttttttaaaacttatggtgcatttattttaaattatattggtagannnnnnngaataaaatgatagaaa 103  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||       |||||||||||||||||    
T  45693275 ttaaatagattaacggagatattgactctcgttttttaaaacttatggtgcatttattttaaattatattcgtagatttttttgaataaaatgatagaaa 45693176  T
Q  104 tatttatgtctatgnnnnnnnnaaggaagaaatattcatttctatgtttgttacaagtttattaaattttattcttgatgagaatag 190  Q
    |||| |||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  45693175 tattcatgtctatgttttttttaaggaagaaatattcatttctatgtttgttacaaatttattaaattttattcttggtgagaatag 45693089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 1723279 - 1723327
Alignment:
Q  132 gaaatattcatttctatgtttgttacaagtttattaaattttattcttg 180  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  1723279 gaaatatacatttcaatgtttgttacaagtttattaaattttattcttg 1723327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 1988332 - 1988287
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttatt 176  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||    
T  1988332 agaaatatacatgcctatgtttgttacaagtttattaaattttatt 1988287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 346409 - 346441
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||||||||||    
T  346409 ctatgtttgttacaagtttattaaattttattc 346441  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 13539685 - 13539643
Alignment:
Q  135 atattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||| ||| |||||||||||||||| |||||||||||||||||    
T  13539685 atatgcatgtctatgtttgttacaaatttattaaattttattc 13539643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 14253543 - 14253497
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||  || ||||||||||||||||||||| ||||||||||||    
T  14253543 agaaatatatatgtctatgtttgttacaagtttactaaattttattc 14253497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 6571694 - 6571661
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattct 178  Q
    |||||||||||||||||||| |||||||||||||    
T  6571694 ctatgtttgttacaagtttactaaattttattct 6571661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 21737463 - 21737496
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  21737463 tctatgtttgttacaagtttactaaattttattc 21737496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 27358026 - 27358059
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  27358026 tctatgtttgttacaagtttactaaattttattc 27358059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 37192530 - 37192497
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||| |||||||    
T  37192530 tctatgtttgttacaagtttattaaaatttattc 37192497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 37533960 - 37533927
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  37533960 tctatgtttgttacaagtttactaaattttattc 37533927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 45694196 - 45694163
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  45694196 tctatgtttgttacaagtttactaaattttattc 45694163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 2050873 - 2050841
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  2050873 ctatgtttgttacaagtttactaaattttattc 2050841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 2521682 - 2521650
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  2521682 ctatgtttgttacaagtttactaaattttattc 2521650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 3902462 - 3902430
Alignment:
Q  146 tatgtttgttacaagtttattaaattttattct 178  Q
    ||||||||||||||||||| |||||||||||||    
T  3902462 tatgtttgttacaagtttactaaattttattct 3902430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 5770174 - 5770206
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  5770174 ctatgtttgttacaagtttactaaattttattc 5770206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 6171798 - 6171766
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  6171798 ctatgtttgttacaagtttactaaattttattc 6171766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 11071612 - 11071580
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  11071612 ctatgtttgttacaagtttactaaattttattc 11071580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 14777562 - 14777594
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  14777562 ctatgtttgttacaagtttactaaattttattc 14777594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 18713721 - 18713753
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  18713721 ctatgtttgttacaagtttactaaattttattc 18713753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 37233436 - 37233404
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  37233436 ctatgtttgttacaagtttactaaattttattc 37233404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 39995195 - 39995227
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  39995195 ctatgtttgttacaagtttactaaattttattc 39995227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 40570027 - 40569995
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||| |||||||||||||    
T  40570027 ctatgtttgttacaagtttgttaaattttattc 40569995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 42674725 - 42674757
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  42674725 ctatgtttgttacaagtttactaaattttattc 42674757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 23346 - 23392
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  23346 agaaatatacatgtctatgtttgttacaagtttactaaattttattc 23392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 119341 - 119295
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  119341 agaaatatacatgtctatgtttgttacaagtttactaaattttattc 119295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 19089767 - 19089817
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattcttga 181  Q
    |||||||| ||| | ||||||||||| ||||||||||||||||||||||||    
T  19089767 agaaatatgcatgtttatgtttgttataagtttattaaattttattcttga 19089817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 28023852 - 28023807
Alignment:
Q  133 aaatattcatttctatgtttgttacaagtttattaaattttattct 178  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||    
T  28023852 aaatattcatgtctatatttgttacaagttcattaaattttattct 28023807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 4765624 - 4765656
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||||||||||    
T  4765624 ctatgtttgttacaagtttattaaattttattc 4765656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 176
Target Start/End: Original strand, 830085 - 830115
Alignment:
Q  146 tatgtttgttacaagtttattaaattttatt 176  Q
    |||||||||||||||||||||||||||||||    
T  830085 tatgtttgttacaagtttattaaattttatt 830115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 8646454 - 8646487
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  8646454 tctatgtttgttacaagtttactaaattttattc 8646487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 18412216 - 18412183
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattct 178  Q
    |||||||||||||||||||| |||||||||||||    
T  18412216 ctatgtttgttacaagtttactaaattttattct 18412183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 20962597 - 20962564
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattct 178  Q
    |||||||||||||||||||| |||||||||||||    
T  20962597 ctatgtttgttacaagtttactaaattttattct 20962564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 27481017 - 27480984
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  27481017 tctatgtttgttacaagtttactaaattttattc 27480984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 29543078 - 29543111
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  29543078 tctatgtttgttacaagtttactaaattttattc 29543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 31583125 - 31583158
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  31583125 tctatgtttgttacaagtttactaaattttattc 31583158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 11855719 - 11855751
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  11855719 ctatgtttgttacaagtttactaaattttattc 11855751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 12970594 - 12970626
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  12970594 ctatgtttgttacaagtttactaaattttattc 12970626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 27481364 - 27481332
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  27481364 ctatgtttgttacaagtttactaaattttattc 27481332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 28602562 - 28602530
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  28602562 ctatgtttgttacaagtttactaaattttattc 28602530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 33647753 - 33647799
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  33647753 agaaatatacatctctatgtttgttacaagtttactaaattttattc 33647799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 18460947 - 18460912
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattctt 179  Q
    ||||||||||||||||||||| ||||||||||||||    
T  18460947 tctatgtttgttacaagtttactaaattttattctt 18460912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 43132221 - 43132252
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttatt 176  Q
    ||||||||||||||||||||||||||||||||    
T  43132221 ctatgtttgttacaagtttattaaattttatt 43132252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 44534240 - 44534194
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| |||||| ||||||| || ||||||||||||||||||||    
T  44534240 agaaatatacatttcaatgtttgctataagtttattaaattttattc 44534194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 6832019 - 6832052
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  6832019 tctatgtttgttacaagtttactaaattttattc 6832052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 31611048 - 31611081
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  31611048 tctatgtttgttacaagtttactaaattttattc 31611081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 43718993 - 43719026
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||| |||||||    
T  43718993 tctatgtttgttacaagtttattaaaatttattc 43719026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 6231565 - 6231597
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  6231565 ctatgtttgttacaagtttactaaattttattc 6231597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 12931005 - 12931037
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  12931005 ctatgtttgttacaagtttactaaattttattc 12931037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 20297800 - 20297768
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||||||| |||||||    
T  20297800 ctatgtttgttacaagtttattaaaatttattc 20297768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 24574582 - 24574550
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  24574582 ctatgtttgttacaagtttactaaattttattc 24574550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 26849029 - 26848997
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  26849029 ctatgtttgttacaagtttactaaattttattc 26848997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 31435987 - 31436019
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  31435987 ctatgtttgttacaagtttactaaattttattc 31436019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 33217977 - 33218009
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||| |||||||||||||||||    
T  33217977 ctatgtttgttacaaatttattaaattttattc 33218009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 40908272 - 40908240
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  40908272 ctatgtttgttacaagtttactaaattttattc 40908240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 46359959 - 46359927
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  46359959 ctatgtttgttacaagtttactaaattttattc 46359927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 47114921 - 47114953
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  47114921 ctatgtttgttacaagtttactaaattttattc 47114953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 16257060 - 16257106
Alignment:
Q  133 aaatattcatttctatgtttgttacaagtttattaaattttattctt 179  Q
    |||||| |||||| |||||| ||||||||||||||||||||||||||    
T  16257060 aaatatacatttcaatgttttttacaagtttattaaattttattctt 16257106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 20505039 - 20505085
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  20505039 agaaatatacatgtctatgtttgttacaagtttactaaattttattc 20505085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 2632860 - 2632828
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||||||||||    
T  2632860 ctatgtttgttacaagtttattaaattttattc 2632828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 3572629 - 3572661
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||||||||||    
T  3572629 ctatgtttgttacaagtttattaaattttattc 3572661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 19094134 - 19094090
Alignment:
Q  132 gaaatattcatttctatgtttgttacaagtttattaaattttatt 176  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||||    
T  19094134 gaaatatgcattcctatgtttgttgcaagtttattaaattttatt 19094090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 30241017 - 30240985
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||||||||||    
T  30241017 ctatgtttgttacaagtttattaaattttattc 30240985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 177
Target Start/End: Complemental strand, 37261854 - 37261823
Alignment:
Q  146 tatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||||||||||||||    
T  37261854 tatgtttgttacaagtttattaaattttattc 37261823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 11014491 - 11014537
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| ||| ||||||||||||||||||||| |||||| |||||    
T  11014491 agaaatatacatgtctatgtttgttacaagtttaataaattatattc 11014537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 13521343 - 13521297
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| ||| ||| ||||||||||||||||| ||||||||||||    
T  13521343 agaaatatacatgtctgtgtttgttacaagtttactaaattttattc 13521297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 19083155 - 19083201
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| ||| ||||||||||||| ||||||| ||||||||||||    
T  19083155 agaaatatacatgtctatgtttgttataagtttactaaattttattc 19083201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 19131043 - 19131089
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| ||| ||||||||||||| ||||||| ||||||||||||    
T  19131043 agaaatatacatgtctatgtttgttataagtttactaaattttattc 19131089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 29091675 - 29091641
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattct 178  Q
    ||||||||||||||||||||| |||||||||||||    
T  29091675 tctatgtttgttacaagtttactaaattttattct 29091641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 52630782 - 52630748
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattct 178  Q
    ||||||||||||||||||||| |||||||||||||    
T  52630782 tctatgtttgttacaagtttactaaattttattct 52630748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 177
Target Start/End: Complemental strand, 19143623 - 19143578
Alignment:
Q  132 gaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||| |||| ||||||||||| |||||||||||||| ||||||    
T  19143623 gaaatatgcattcctatgtttgttgcaagtttattaaatcttattc 19143578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 39329617 - 39329584
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  39329617 tctatgtttgttacaagtttactaaattttattc 39329584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 1597406 - 1597438
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  1597406 ctatgtttgttacaagtttactaaattttattc 1597438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 2430504 - 2430472
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  2430504 ctatgtttgttacaagtttactaaattttattc 2430472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 5518568 - 5518600
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  5518568 ctatgtttgttacaagtttactaaattttattc 5518600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 6911501 - 6911469
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  6911501 ctatgtttgttacaagtttactaaattttattc 6911469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 12190241 - 12190273
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  12190241 ctatgtttgttacaagtttactaaattttattc 12190273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 20260150 - 20260182
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  20260150 ctatgtttgttacaagtttactaaattttattc 20260182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 36361790 - 36361758
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  36361790 ctatgtttgttacaagtttactaaattttattc 36361758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 37727045 - 37727001
Alignment:
Q  132 gaaatattcatttctatgtttgttacaagtttattaaattttatt 176  Q
    ||||||| ||| ||||||||||||||||||||  |||||||||||    
T  37727045 gaaatatacatatctatgtttgttacaagttttctaaattttatt 37727001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 46666716 - 46666684
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  46666716 ctatgtttgttacaagtttactaaattttattc 46666684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 46960635 - 46960603
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  46960635 ctatgtttgttacaagtttactaaattttattc 46960603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1480 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1480
Description:

Target: scaffold1480; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 436 - 481
Alignment:
Q  132 gaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||    
T  436 gaaatatgcattcctatgtttgttgcaagtttattaaattttattc 481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 21841 - 21886
Alignment:
Q  132 gaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||| |||| ||||||||||| |||||||||||||||||||||    
T  21841 gaaatatgcattcctatgtttgttgcaagtttattaaattttattc 21886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 10902700 - 10902745
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttatt 176  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||    
T  10902700 agaaatatacatgtctatgtttgttacaagtttactaaattttatt 10902745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 30871209 - 30871164
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttatt 176  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||    
T  30871209 agaaatatacatttttatgtttgttacaagtttattaagttttatt 30871164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 44566053 - 44566020
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||||||||||||||||    
T  44566053 tctatgtttgttacaagtttattaaattttattc 44566020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 48341369 - 48341337
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||||||||||    
T  48341369 ctatgtttgttacaagtttattaaattttattc 48341337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 176
Target Start/End: Complemental strand, 45045633 - 45045602
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttatt 176  Q
    ||||||||||||||||||||||||||||||||    
T  45045633 ctatgtttgttacaagtttattaaattttatt 45045602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 47246116 - 47246163
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattct 178  Q
    ||||||||  |||||||||||||||||||||||| | |||||||||||    
T  47246116 agaaatatatatttctatgtttgttacaagtttactgaattttattct 47246163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 5543183 - 5543228
Alignment:
Q  133 aaatattcatttctatgtttgttacaagtttattaaattttattct 178  Q
    |||||| ||| | ||||||||||||||||||| |||||||||||||    
T  5543183 aaatatacatgtttatgtttgttacaagtttactaaattttattct 5543228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 45448950 - 45448917
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  45448950 tctatgtttgttacaagtttactaaattttattc 45448917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 48160654 - 48160687
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  48160654 tctatgtttgttacaagtttactaaattttattc 48160687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 9947054 - 9947086
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  9947054 ctatgtttgttacaagtttactaaattttattc 9947086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 11000709 - 11000677
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  11000709 ctatgtttgttacaagtttactaaattttattc 11000677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 27248300 - 27248268
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  27248300 ctatgtttgttacaagtttactaaattttattc 27248268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 33378849 - 33378817
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  33378849 ctatgtttgttacaagtttactaaattttattc 33378817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 35488253 - 35488285
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  35488253 ctatgtttgttacaagtttactaaattttattc 35488285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 40212896 - 40212864
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  40212896 ctatgtttgttacaagtttactaaattttattc 40212864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 29421554 - 29421586
Alignment:
Q  146 tatgtttgttacaagtttattaaattttattct 178  Q
    |||||||||||||||||||||||||||||||||    
T  29421554 tatgtttgttacaagtttattaaattttattct 29421586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 32660997 - 32661029
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||||||||||    
T  32660997 ctatgtttgttacaagtttattaaattttattc 32661029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 37392610 - 37392642
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||||||||||||||||    
T  37392610 ctatgtttgttacaagtttattaaattttattc 37392642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 35394412 - 35394365
Alignment:
Q  130 aagaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||  || ||||||||||||||||||||| ||||||||||||    
T  35394412 aagaaatatatatgtctatgtttgttacaagtttactaaattttattc 35394365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 1554417 - 1554450
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  1554417 tctatgtttgttacaagtttactaaattttattc 1554450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 3050016 - 3049984
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  3050016 ctatgtttgttacaagtttactaaattttattc 3049984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 7317380 - 7317348
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  7317380 ctatgtttgttacaagtttactaaattttattc 7317348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 16313571 - 16313603
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  16313571 ctatgtttgttacaagtttactaaattttattc 16313603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 18298119 - 18298087
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  18298119 ctatgtttgttacaagtttactaaattttattc 18298087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 18726683 - 18726715
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  18726683 ctatgtttgttacaagtttactaaattttattc 18726715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 21137196 - 21137228
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  21137196 ctatgtttgttacaagtttactaaattttattc 21137228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 25899640 - 25899608
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttatt 176  Q
    |||||||||||| ||||||||||||||||||||    
T  25899640 tctatgtttgttgcaagtttattaaattttatt 25899608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 26602002 - 26602034
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  26602002 ctatgtttgttacaagtttactaaattttattc 26602034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 35818488 - 35818520
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  35818488 ctatgtttgttacaagtttactaaattttattc 35818520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 38364088 - 38364056
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  38364088 ctatgtttgttacaagtttactaaattttattc 38364056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 43872030 - 43872062
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||| |||||||||||||    
T  43872030 ctatgtttgttacaagtttgttaaattttattc 43872062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 52469710 - 52469678
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttatt 176  Q
    |||||||||||||||||||||||||||||||||    
T  52469710 tctatgtttgttacaagtttattaaattttatt 52469678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 44309785 - 44309739
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||| ||| ||||||||||||||||| ||| ||||||||||||    
T  44309785 agaaatatgcatgtctatgtttgttacaaggttactaaattttattc 44309739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 50672968 - 50673002
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattct 178  Q
    ||||||||||||||||||||| |||||||||||||    
T  50672968 tctatgtttgttacaagtttactaaattttattct 50673002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 51968802 - 51968752
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattcttga 181  Q
    |||||||| |||  |||||||||||||||||||  ||||||||||||||||    
T  51968802 agaaatatgcatgcctatgtttgttacaagtttgctaaattttattcttga 51968752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 6279984 - 6280017
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  6279984 tctatgtttgttacaagtttactaaattttattc 6280017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 27555422 - 27555389
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  27555422 tctatgtttgttacaagtttactaaattttattc 27555389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 34049660 - 34049693
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  34049660 tctatgtttgttacaagtttactaaattttattc 34049693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 39730356 - 39730389
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||| ||||||||||||    
T  39730356 tctatgtttgttacaagtttactaaattttattc 39730389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 936137 - 936105
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  936137 ctatgtttgttacaagtttactaaattttattc 936105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 10400868 - 10400904
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattcttg 180  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  10400868 tctatgtttattacaagtttactaaattttattcttg 10400904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 13230053 - 13230085
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  13230053 ctatgtttgttacaagtttactaaattttattc 13230085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 25916097 - 25916129
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  25916097 ctatgtttgttacaagtttactaaattttattc 25916129  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 27762963 - 27762995
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  27762963 ctatgtttgttacaagtttactaaattttattc 27762995  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 42773959 - 42773927
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  42773959 ctatgtttgttacaagtttactaaattttattc 42773927  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 45747860 - 45747892
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  45747860 ctatgtttgttacaagtttactaaattttattc 45747892  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 47426304 - 47426336
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttatt 176  Q
    ||||||||||||||||||||| |||||||||||    
T  47426304 tctatgtttgttacaagtttactaaattttatt 47426336  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 48518955 - 48518987
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  48518955 ctatgtttgttacaagtttactaaattttattc 48518987  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 345894 - 345928
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattct 178  Q
    ||||||||||||||||||||| |||||||||||||    
T  345894 tctatgtttgttacaagtttactaaattttattct 345928  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 6705815 - 6705861
Alignment:
Q  131 agaaatattcatttctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||  || ||||||||||||||||||||| ||||||||||||    
T  6705815 agaaatatatatgtctatgtttgttacaagtttactaaattttattc 6705861  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 16968933 - 16968899
Alignment:
Q  144 tctatgtttgttacaagtttattaaattttattct 178  Q
    ||||||||||||||||||||| |||||||||||||    
T  16968933 tctatgtttgttacaagtttactaaattttattct 16968899  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 2657707 - 2657675
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  2657707 ctatgtttgttacaagtttactaaattttattc 2657675  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 7053634 - 7053666
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  7053634 ctatgtttgttacaagtttactaaattttattc 7053666  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 14171020 - 14170988
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  14171020 ctatgtttgttacaagtttactaaattttattc 14170988  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 18897928 - 18897896
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    ||||||||||||||||||||||||| |||||||    
T  18897928 ctatgtttgttacaagtttattaaaatttattc 18897896  T

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Target: scaffold0702 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 3629 - 3661
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  3629 ctatgtttgttacaagtttactaaattttattc 3661  T

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Target: scaffold0662 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 4475 - 4443
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  4475 ctatgtttgttacaagtttactaaattttattc 4443  T

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Target: scaffold0189 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 29016 - 29048
Alignment:
Q  145 ctatgtttgttacaagtttattaaattttattc 177  Q
    |||||||||||||||||||| ||||||||||||    
T  29016 ctatgtttgttacaagtttactaaattttattc 29048  T

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