View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_38 (Length: 202)
Name: NF11150_low_38
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_38 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 3341966 - 3342151
Alignment:
| Q |
18 |
agcttattccaacaggacttagaatttggctttacaggtaattaattcattcattcaatcaatcaaatagtactattcaagaccatgcatgcatgtggtg |
117 |
Q |
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| T |
3341966 |
agcttattccaacaggacttagaatttggctttacaggtaattaattaattcattcattcaatcaaatagtactattcaagaccatgcatgcatgtggtg |
3342065 |
T |
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| Q |
118 |
cctgtgacattttctcatatatttttgttcatcttttttatcattgaat-gttcagtggagacacagatggtagagtgccagtatt |
202 |
Q |
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| T |
3342066 |
cctgtgacattttctcatatatttttgttcatcttttttatcattgaatggttcagtggagacacagatggtagagtgccagtatt |
3342151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 3334672 - 3334710
Alignment:
| Q |
161 |
ttgaatgttcagtggagacacagatggtagagtgccagt |
199 |
Q |
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| T |
3334672 |
ttgattgttcagtggagacactgatggtagagtgccagt |
3334710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 3334405 - 3334445
Alignment:
| Q |
18 |
agcttattccaacaggacttagaatttggctttacaggtaa |
58 |
Q |
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| T |
3334405 |
agcttatttcagccggacttagaatttggctttacaggtaa |
3334445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 35792920 - 35792888
Alignment:
| Q |
167 |
gttcagtggagacacagatggtagagtgccagt |
199 |
Q |
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| T |
35792920 |
gttcagtggagacacagatggtagagtaccagt |
35792888 |
T |
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