View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_4 (Length: 512)
Name: NF11150_low_4
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 501
Target Start/End: Original strand, 34255512 - 34255996
Alignment:
| Q |
18 |
gttatcaccaggtatattgttcggttatcaaaagctcgaatctcctctgagagtggtgtccacatttagttttcgacgttgcctcaaacatggtttcctc |
117 |
Q |
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| T |
34255512 |
gttatcaccaggtatattgttcggttatcaaaagctcgaatctcctctgagagtggtgtccacatttagttttcgacgttgcctcaaacatggtttcctc |
34255611 |
T |
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| Q |
118 |
ctgtatgtgggaaaccnnnnnnntatgcagcttccatttggagatcatgtttatccatccaaatatgnnnnnnn-gttcaatttaatatatccttgtatg |
216 |
Q |
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| T |
34255612 |
ctgtatgtgggaaaccaaaaaaatatgtagcttccatttggagatcatgtttatccatccaaatatgttttttttgttcaatttaatatatccttgtatg |
34255711 |
T |
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| Q |
217 |
aattttctaagatgttattctgcattctattgaatgcttcttgcaggttgatcaagaaaagaaatggggtgaagttgtttctgcactaaaactggaagga |
316 |
Q |
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| T |
34255712 |
aattttctaagatgttattctgcattctattgaatgcttcttgcaggttgatcaagaaaagaaatggggtgaagttgtttctgcactaaaactggaagga |
34255811 |
T |
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| Q |
317 |
aacaatgcaaccttgtgtgatcaacttgaaaagctctataaagaacttctgtacaaatttgagacattgtacttctacaggtctcctgcaactggcagca |
416 |
Q |
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| T |
34255812 |
aacaatgcaaccttgtgtgatcaacttgaaaagctctataaagaacttctgtacaaatttgagacattgtacttctacaggtctcctgcaactggcagca |
34255911 |
T |
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| Q |
417 |
atacaggttaattggcggtttcgacatatacggttttagtttataattttgcttgacttgttggacatagcagaatacatttcat |
501 |
Q |
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| T |
34255912 |
atacaggttaattggcggtttcgacatatacggttttagtttataattttgcttgacttgttggacatagcagaatacatttcat |
34255996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 240 - 428
Target Start/End: Original strand, 41552279 - 41552467
Alignment:
| Q |
240 |
attctattgaatgcttcttgcaggttgatcaagaaaagaaatggggtgaagttgtttctgcactaaaactggaaggaaacaatgcaaccttgtgtgatca |
339 |
Q |
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| T |
41552279 |
attctcttgaatgtttcctacaggttggccaagaaaagaaatggagtgaagttgtttctgcactaaaactggaaggaaacaatgcaaccttatgtgctca |
41552378 |
T |
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| Q |
340 |
acttgaaaagctctataaagaacttctgtacaaatttgagacattgtacttctacaggtctcctgcaactggcagcaatacaggttaat |
428 |
Q |
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| T |
41552379 |
agttgaaaatctctatggttatcttctttacgaatttgagaaattgtacttctacaggtctcctgcaactggcaccacaacaggttaat |
41552467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 491
Target Start/End: Original strand, 34377639 - 34377703
Alignment:
| Q |
427 |
attggcggtttcgacatatacggttttagtttataattttgcttgacttgttggacatagcagaa |
491 |
Q |
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| T |
34377639 |
attggcagtttctacatttacgattttagtttgcaatttttcttgactaattggacatagcagaa |
34377703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 415
Target Start/End: Original strand, 37557019 - 37557161
Alignment:
| Q |
273 |
aaaagaaatggggtgaagttgtttctgcactaaaactggaaggaaacaatgcaaccttgtgtgatcaacttgaaaagctctataaagaacttctgtacaa |
372 |
Q |
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|||| |||||| ||||||||| |||||||| ||| ||||||| |||||||||| || | || |||| | |||||| ||||| | |||||| ||||| |
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| T |
37557019 |
aaaacaaatggactgaagttgtctctgcactgaaattggaaggcaacaatgcaatgttatctgctcaagtcgaaaagatctatgcaacacttctatacaa |
37557118 |
T |
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| Q |
373 |
atttgagacattgtacttctacaggtctcctgcaactggcagc |
415 |
Q |
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| T |
37557119 |
atttgagaaattgtacttctacaggtttcctccaaccggcagc |
37557161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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