View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_7 (Length: 499)
Name: NF11150_low_7
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 19 - 489
Target Start/End: Complemental strand, 38254343 - 38253873
Alignment:
| Q |
19 |
attaaccacgattttcacgatatacatgatatcttttaaccacaatttgtgtttagatatacacttcaaagtcatggttaatgacgtttaaaatcgttgt |
118 |
Q |
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| T |
38254343 |
attaaccacgattttcacgatatacatgatatcttttaaccacaatttgtgtttagatatacacttcaaagtcatggttaatgacgtttaaaatcgttgt |
38254244 |
T |
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| Q |
119 |
caattgtgctcagatggttgatgagttgcaacaccttgttatatgattatattccataatcatttattgaacataattaaccatgtattcatactgtttt |
218 |
Q |
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| T |
38254243 |
caattgtgctcagatggttgatgagttgcaacaccttgttatatgattatattccttaatcatttattgaacataattaaccatgtattcatactgtttt |
38254144 |
T |
|
| Q |
219 |
aaccatccaatccaaattatctacaaaatgataatgtcaatgattggctgtatgtgacttaagagtagtgatgtttggaattcaggttttcagatggatg |
318 |
Q |
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| T |
38254143 |
aaccatccaatccaaattatctacaaaatgataatgtcaatgattggctgtatgtgacttaagagtagtgatgtttggaattcaggttttcagatggatg |
38254044 |
T |
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| Q |
319 |
cagagacaacgatggtatattgcggataatggggtttactcaaaactcatatcagttatgggaaagaaagggcaaatcaggctggctatgtggcttttct |
418 |
Q |
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| T |
38254043 |
cagagacaacgatggtatattgcggataatggggtttactcaaaactcatatcagttatgggaaagaaagggcaaatcaggctggctatgtggcttttct |
38253944 |
T |
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| Q |
419 |
cagagatgcggaacactggttgtcgcccggatacttctgtgtataattcacttatctctgcccaccttcat |
489 |
Q |
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| T |
38253943 |
cagagatgcggaacactggctgtcgcccggatacttctgtgtataattcacttatctctgcccaccttcat |
38253873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 42467757 - 42467832
Alignment:
| Q |
38 |
atatacatgatatcttttaaccacaatttgtgtttagatatacacttcaaagtcatggttaatgacgtttaaaatc |
113 |
Q |
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| T |
42467757 |
atatacatgatatcttttaaccacaatttgtgttcaaatataaacatgaaaatcatggttaatgacattcaaaatc |
42467832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 28303282 - 28303326
Alignment:
| Q |
38 |
atatacatgatatcttttaaccacaatttgtgtttagatatacac |
82 |
Q |
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| T |
28303282 |
atatacatgatatctattaaccacaatttgtgttcaaatatacac |
28303326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 46278713 - 46278757
Alignment:
| Q |
38 |
atatacatgatatcttttaaccacaatttgtgtttagatatacac |
82 |
Q |
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| T |
46278713 |
atatacatgatatctattagccacaatttgtgttaaaatatacac |
46278757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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