View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11150_low_8 (Length: 491)
Name: NF11150_low_8
Description: NF11150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11150_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 15 - 474
Target Start/End: Complemental strand, 25841129 - 25840670
Alignment:
| Q |
15 |
gagcagagatggaacaaccaaaaaatcactatggttaatcgaaccggtcgaaacaaaacctcaccatatacgcctcaggagccaccacggccgttaccta |
114 |
Q |
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| T |
25841129 |
gagcagaaatggaacaaccaaaaaatcactatggtttatcgaaccggtcgaaacaaaacctcaccatatacgcctcaggagccaccatggccgttaccta |
25841030 |
T |
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| Q |
115 |
accgcgacagacacgccatttctcctcggcatgaccggaaacaaagttgtccaagccgattacgacgcgggtttgggctggaaatatgaatgggaaccaa |
214 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25841029 |
accgcgacggacacgccatttctcctcggcatgaccggaaacaaagttgtccaagccgattacgacgcgggtttgggctggaaatatgaatgggaaccaa |
25840930 |
T |
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| Q |
215 |
taaaagaagggttcaacgtgaaactgagaagttggtgtggaaaatatttgagaggtaatggtggaacaccaccatggagaaattctattacacatgatga |
314 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25840929 |
taaaagaagggttcaacgtgaaactgaggagttggtgtggaaaatatttgagaggtaatggtggaacaccaccatggagaaattctattacacatgatga |
25840830 |
T |
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| Q |
315 |
tcctacctctgctacacataattggattctttggggtgtagagtttgtggagttatcattggctaatcaggagaatgttgaattgttgaatcaaattagt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25840829 |
tcctacctctgctacacataattggattctttggggtgtagagtttgtggagttatcattggctaatcaggagaatgttgaattgttgaatcaaattagt |
25840730 |
T |
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| Q |
415 |
tttgcttctatttcttcatttgattctcgtgatgaggttaatgattctgaattggtttct |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25840729 |
tttgcttctatttcttcatttgattctcgtgatgaggttaatgattctgaattggtttct |
25840670 |
T |
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